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NeXus API code and helper applications
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The testsuite of NeXus-4rc3 fails on RedHat Enterprise Linux ES release 3 (Taroon Update 8) #76

Closed stuartcampbell closed 10 years ago

stuartcampbell commented 10 years ago

Original reporter: Rwong

The testsuite.log is as follows:

--------------------------------

NeXus Library 4.0rc3 test suite.

--------------------------------

testsuite: command line was: $ ./testsuite

-----------

ChangeLogs.

-----------

testsuite: ../ChangeLog: 2007-05-16 16:18 Freddie Akeroyd F.A.Akeroyd@rl.ac.uk
* .: Creating 4.0rc3 tag. Refs #36.
2007-05-16 16:02 Freddie Akeroyd F.A.Akeroyd@rl.ac.uk
* branches/4.0/NEWS: Update release notes. Refs #36.
2007-04-20 15:28 Freddie Akeroyd F.A.Akeroyd@rl.ac.uk

---------

Platform.

---------

hostname = grid-data.rl.ac.uk uname -m = i686 uname -r = 2.4.21-47.0.1.ELsmp uname -s = Linux uname -v = #1 SMP Fri Oct 13 17:56:20 EDT 2006

/usr/bin/uname -p = unknown /bin/uname -X = unknown

/bin/arch = i686 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown

PATH: /home/rw33/tmp.d/nexus-4.0rc3/test PATH: /usr/local/Cluster-Apps/lsf/6.1/linux2.4-glibc2.3-x86/bin PATH: /usr/local/Cluster-Apps/lsf/6.1/linux2.4-glibc2.3-x86/etc PATH: /usr/local/Cluster-Apps/Modules/bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/X11R6/bin PATH: /home/rw33/tmp.d/nexus-4.0rc3 PATH: /usr/local/vdt/globus/bin PATH: /usr/local/vdt/globus/sbin PATH: /usr/local/Cluster-Apps/gm-2.0.8/bin PATH: /usr/local/Cluster-Apps/cluster-tools-0.9/bin PATH: /usr/local/Cluster-Apps/cluster-tools-0.9/sbin PATH: /usr/local/Cluster-Apps/mpich-1.2.5..10-intel/bin PATH: /usr/local/applications/bioinformatics/EMBOSS-2.8.0/LINUX/bin

testsuite: atconfig: # Configurable variable values for building test suites. # Generated by ./config.status. # Copyright (C) 2000, 2001, 2003 Free Software Foundation, Inc.
# The test suite will define top_srcdir=/../.. etc.
at_testdir='test'
abs_builddir='/home/rw33/tmp.d/nexus-4.0rc3/test'
at_srcdir='.'
abs_srcdir='/home/rw33/tmp.d/nexus-4.0rc3/test'
at_top_srcdir='..'
abs_top_srcdir='/home/rw33/tmp.d/nexus-4.0rc3/test/..'
at_top_builddir='../'
abs_top_builddir='/home/rw33/tmp.d/nexus-4.0rc3/test/../.'
AUTOTEST_PATH='test'
SHELL=${CONFIG_SHELL-'/bin/sh'}

testsuite: atlocal: | #!/bin/sh | # | # $Id: atlocal.in 916 2007-04-02 12:28:23Z Freddie Akeroyd $ | # | # test/atlocal. Generated from atlocal.in by configure. | # | SETUP_TEST="sh $abs_srcdir/setup_test $abs_srcdir" | export SETUP_TEST | # | if test ! -z ""; then | HAVE_HDF4="napi_test-hdf4-static -q" | else | HAVE_HDF4=skip_test | fi | export HAVE_HDF4 | # | if test ! -z "/home/rw33/tmp.d/hdf5-1.6.5/hdf5/"; then | HAVE_HDF5="napi_test-hdf5-static -q" | else | HAVE_HDF5=skip_test | fi | export HAVE_HDF5 | # | if test ! -z ""; then | HAVE_XML="napi_test-xml-static -q" | else | HAVE_XML=skip_test | fi | export HAVE_XML | # | if test ! -z ""; then | HAVE_F77=run_test | else | HAVE_F77=skip_test | fi | export HAVE_F77 | # | if test ! -z ""; then | HAVE_F90=run_test | else | HAVE_F90=skip_test | fi | export HAVE_F90 | # | if test -f nxsummary; then | HAVE_NXSUMMARY=run_test | else | HAVE_NXSUMMARY=skip_test | fi | export HAVE_NXSUMMARY | # | if test -f nxtranslate; then | HAVE_NXTRANSLATE=run_test | else | HAVE_NXTRANSLATE=skip_test | fi | export HAVE_NXTRANSLATE | #

----------------

Tested programs.

----------------

------------------

Running the tests.

------------------

testsuite: starting at: Wed May 23 14:29:33 BST 2007

  1. Check the HDF4 binding (testsuite.at:29): skipped (testsuite.at:71)
  2. Check the HDF5 binding (testsuite.at:74): ok (0m0.060s 0m0.080s)
  3. Check the HDF4 binding (static library) (testsuite.at:119): skipped (testsuite.at:161)
  4. Check the HDF5 binding (static library) (testsuite.at:164): ok (0m0.010s 0m0.030s)
  5. Check the XML binding (testsuite.at:209): skipped (testsuite.at:251)
  6. Check the XML binding (static library) (testsuite.at:254): skipped (testsuite.at:296)
  7. Check the F77 binding using HDF4. (testsuite.at:301): skipped (testsuite.at:334)
  8. Check the F77 binding using HDF5. (testsuite.at:337): skipped (testsuite.at:370)
  9. Check the F90 binding using HDF5. (testsuite.at:373): skipped (testsuite.at:407)
  10. Checking HDF4 -> HDF4 (testsuite.at:411): skipped (testsuite.at:415)
  11. Checking HDF4 -> HDF5 (testsuite.at:417): skipped (testsuite.at:421)
  12. Checking HDF4 -> XML (testsuite.at:423): skipped (testsuite.at:427)
  13. Checking HDF5 -> HDF4 (testsuite.at:429): skipped (testsuite.at:433)
  14. Checking HDF5 -> HDF5 (testsuite.at:435): ok (0m0.000s 0m0.030s)
  15. Checking HDF5 -> XML (testsuite.at:441): skipped (testsuite.at:445)
  16. Checking XML -> HDF4 (testsuite.at:447): skipped (testsuite.at:451)
  17. Checking XML -> HDF5 (testsuite.at:453): skipped (testsuite.at:457)
  18. Checking XML -> XML (testsuite.at:459): skipped (testsuite.at:463)
  19. Checking HDF4 test file (testsuite.at:467): skipped (testsuite.at:470)
  20. Checking XML test file (testsuite.at:477): skipped (testsuite.at:480)
  21. Checking HDF4 test file (testsuite.at:484): skipped (testsuite.at:494)
  22. Checking HDF5 test file (testsuite.at:496): ok (0m0.000s 0m0.060s)
  23. Checking XML test file (testsuite.at:508): skipped (testsuite.at:518)
  24. Checking HDF4 test file (testsuite.at:522): skipped (testsuite.at:526)
  25. Checking HDF5 test file (testsuite.at:528): ok (0m0.000s 0m0.030s)
  26. Checking XML test file (testsuite.at:534): skipped (testsuite.at:538) testsuite: ending at: Wed May 23 14:29:37 BST 2007 testsuite: test suite duration: 0h 0m 4s

    -------------

    Test results.

    -------------

ERROR: 6 tests were run, 1 failed unexpectedly. 21 tests were skipped.

------------------------

Summary of the failures.

------------------------

Failed tests: NeXus Library 4.0rc3 test suite test groups:

NUM: FILENAME:LINE TEST-GROUP-NAME KEYWORDS

20: testsuite.at:472 Checking HDF5 test file

Skipped tests: NeXus Library 4.0rc3 test suite test groups:

NUM: FILENAME:LINE TEST-GROUP-NAME KEYWORDS

1: testsuite.at:29 Check the HDF4 binding 3: testsuite.at:119 Check the HDF4 binding (static library) 5: testsuite.at:209 Check the XML binding 6: testsuite.at:254 Check the XML binding (static library) 7: testsuite.at:301 Check the F77 binding using HDF4. 8: testsuite.at:337 Check the F77 binding using HDF5. 9: testsuite.at:373 Check the F90 binding using HDF5. 10: testsuite.at:411 Checking HDF4 -> HDF4 11: testsuite.at:417 Checking HDF4 -> HDF5 12: testsuite.at:423 Checking HDF4 -> XML 13: testsuite.at:429 Checking HDF5 -> HDF4 15: testsuite.at:441 Checking HDF5 -> XML 16: testsuite.at:447 Checking XML -> HDF4 17: testsuite.at:453 Checking XML -> HDF5 18: testsuite.at:459 Checking XML -> XML 19: testsuite.at:467 Checking HDF4 test file 21: testsuite.at:477 Checking XML test file 22: testsuite.at:484 Checking HDF4 test file 24: testsuite.at:508 Checking XML test file 25: testsuite.at:522 Checking HDF4 test file 27: testsuite.at:534 Checking XML test file

----------------------

Detailed failed tests.

----------------------

  1. testsuite.at:472: testing ... testsuite.at:475: $HAVE_HDF5 && $HAVE_NXSUMMARY && nxsummary --config NONE NXtest.h5 | sed -e 's/\r$//' --- - 2007-05-23 14:29:36.797187000 +0100 +++ /home/rw33/tmp.d/nexus-4.0rc3/test/testsuite.dir/at-stdout 2007-05-23 14:29:36.000000000 +0100 @@ -1,2 +1,3 @@ +LIBXML2 tree support not present. Using default preferences. SAMPLE:
  2. testsuite.at:472: 20. Checking HDF5 test file (testsuite.at:472): FAILED (testsuite.at:475)

    --------------

    ..//config.log

    --------------

This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake.
It was created by NeXus Library configure 4.0rc3, which was
generated by GNU Autoconf 2.59. Invocation command line was
$ ./configure --prefix=/home/rw33/tmp.d/nexus-4rc3-dist/ --with-cxx --without-fortran --with-hdf5=/home/rw33/tmp.d/hdf5-1.6.5/hdf5/ CC=gcc CXX=g++ --with-java-home=/home/rw33/tmp.d/jdk1.6.0_01 JAVAC=/home/rw33/tmp.d/jdk1.6.0_01/bin/javac JAVA=/home/rw33/tmp.d/jdk1.6.0_01/bin/java JAVAH=/home/rw33/tmp.d/jdk1.6.0_01/bin/javah
## --------- ##
## Platform. ##
## --------- ##
hostname = grid-data.rl.ac.uk
uname -m = i686
uname -r = 2.4.21-47.0.1.ELsmp
uname -s = Linux
uname -v = #1 SMP Fri Oct 13 17:56:20 EDT 2006
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = i686
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/local/Cluster-Apps/lsf/6.1/linux2.4-glibc2.3-x86/bin
PATH: /usr/local/Cluster-Apps/lsf/6.1/linux2.4-glibc2.3-x86/etc
PATH: /usr/local/Cluster-Apps/Modules//bin
PATH: /usr/kerberos/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /usr/X11R6/bin
PATH: .
PATH: /usr/local/vdt/globus/bin
PATH: /usr/local/vdt/globus/sbin
PATH: /usr/local/Cluster-Apps/gm-2.0.8/bin/
PATH: /usr/local/Cluster-Apps/cluster-tools-0.9/bin
PATH: /usr/local/Cluster-Apps/cluster-tools-0.9/sbin
PATH: /usr/local/Cluster-Apps/mpich-1.2.5..10-intel/bin/
PATH: /home/rw33/bin
PATH: /usr/local/applications/bioinformatics/EMBOSS-2.8.0/LINUX/bin
PATH: /home/rw33/tmp.d/cmake-2.4.3-Linux-i386/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:1596: checking build system type
configure:1614: result: i686-redhat-linux-gnu
configure:1622: checking host system type
configure:1636: result: i686-redhat-linux-gnu
configure:1644: checking target system type
configure:1658: result: i686-redhat-linux-gnu
configure:1673: checking for egrep
configure:1683: result: grep -E
configure:1711: checking for a BSD-compatible install
configure:1766: result: /usr/bin/install -c
configure:1777: checking whether build environment is sane
configure:1820: result: yes
configure:1885: checking for gawk
configure:1901: found /bin/gawk
configure:1911: result: gawk
configure:1921: checking whether make sets $(MAKE)
configure:1941: result: yes
configure:2178: checking for gcc
configure:2204: result: gcc
configure:2448: checking for C compiler version
configure:2451: gcc --version </dev/null >&5
gcc (GCC) 3.2.3 20030502 (Red Hat Linux 3.2.3-58)
Copyright (C) 2002 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:2454: $? = 0
configure:2456: gcc -v </dev/null >&5
Reading specs from /usr/lib/gcc-lib/i386-redhat-linux/3.2.3/specs
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --host=i386-redhat-linux
Thread model: posix
gcc version 3.2.3 20030502 (Red Hat Linux 3.2.3-58)
configure:2459: $? = 0
configure:2461: gcc -V </dev/null >&5
gcc: argument to `-V' is missing
configure:2464: $? = 1
configure:2487: checking for C compiler default output file name
configure:2490: gcc conftest.c >&5
configure:2493: $? = 0
configure:2539: result: a.out
configure:2544: checking whether the C compiler works
configure:2550: ./a.out
configure:2553: $? = 0
configure:2570: result: yes
configure:2577: checking whether we are cross compiling
configure:2579: result: no
configure:2582: checking for suffix of executables
configure:2584: gcc -o conftest conftest.c >&5
configure:2587: $? = 0
configure:2612: result:
configure:2618: checking for suffix of object files
configure:2639: gcc -c conftest.c >&5
configure:2642: $? = 0
configure:2664: result: o
configure:2668: checking whether we are using the GNU C compiler
configure:2692: gcc -c conftest.c >&5
configure:2698: $? = 0
configure:2702: test -z
test ! -s conftest.err
configure:2705: $? = 0
configure:2708: test -s conftest.o
configure:2711: $? = 0
configure:2724: result: yes
configure:2730: checking whether gcc accepts -g
configure:2751: gcc -c -g conftest.c >&5
configure:2757: $? = 0
configure:2761: test -z
test ! -s conftest.err
configure:2764: $? = 0
configure:2767: test -s conftest.o
configure:2770: $? = 0
configure:2781: result: yes
configure:2798: checking for gcc option to accept ANSI C
configure:2868: gcc -c -g -O2 conftest.c >&5
configure:2874: $? = 0
configure:2878: test -z
test ! -s conftest.err
configure:2881: $? = 0
configure:2884: test -s conftest.o
configure:2887: $? = 0
configure:2905: result: none needed
configure:2923: gcc -c -g -O2 conftest.c >&5
conftest.c:2: syntax error before "me"
configure:2929: $? = 1
configure: failed program was:
#ifndef __cplusplus
choke me
#endif
configure:3073: checking for style of include used by make
configure:3101: result: GNU
configure:3129: checking dependency style of gcc
configure:3219: result: gcc3
configure:3237: checking for C compiler option -fno-common
configure:3264: gcc -c -g -O2 -fno-common conftest.c >&5 >check_compiler_option.12366 2>&1
configure:3270: $? = 0
configure:3274: test -z
test ! -s conftest.err
configure:3277: $? = 0
configure:3280: test -s conftest.o
configure:3283: $? = 0
configure:3297: result: yes
configure:3423: checking for C++ compiler version
configure:3426: g++ --version </dev/null >&5
g++ (GCC) 3.2.3 20030502 (Red Hat Linux 3.2.3-58)
Copyright (C) 2002 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3429: $? = 0
configure:3431: g++ -v </dev/null >&5
Reading specs from /usr/lib/gcc-lib/i386-redhat-linux/3.2.3/specs
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --host=i386-redhat-linux
Thread model: posix
gcc version 3.2.3 20030502 (Red Hat Linux 3.2.3-58)
configure:3434: $? = 0
configure:3436: g++ -V </dev/null >&5
g++: argument to`-V' missing
configure:3439: $? = 1
configure:3442: checking whether we are using the GNU C++ compiler
configure:3466: g++ -c -fno-common conftest.cc >&5
configure:3472: $? = 0
configure:3476: test -z
test ! -s conftest.err
configure:3479: $? = 0
configure:3482: test -s conftest.o
configure:3485: $? = 0
configure:3498: result: yes
configure:3504: checking whether g++ accepts -g
configure:3525: g++ -c -g -fno-common conftest.cc >&5
configure:3531: $? = 0
configure:3535: test -z
test ! -s conftest.err
configure:3538: $? = 0
configure:3541: test -s conftest.o
configure:3544: $? = 0
configure:3555: result: yes
configure:3597: g++ -c -g -O2 -fno-common conftest.cc >&5
configure:3603: $? = 0
configure:3607: test -z
test ! -s conftest.err
configure:3610: $? = 0
configure:3613: test -s conftest.o
configure:3616: $? = 0
configure:3642: g++ -c -g -O2 -fno-common conftest.cc >&5
conftest.cc: In function `int main()':
conftest.cc:15:`exit' undeclared (first use this function)
conftest.cc:15: (Each undeclared identifier is reported only once for each
function it appears in.)
configure:3648: $? = 1
configure: failed program was:
/* confdefs.h. _/
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
/ end confdefs.h. /
int
main ()
{
exit (42);
;
return 0;
}
configure:3597: g++ -c -g -O2 -fno-common conftest.cc >&5
configure:3603: $? = 0
configure:3607: test -z
test ! -s conftest.err
configure:3610: $? = 0
configure:3613: test -s conftest.o
configure:3616: $? = 0
configure:3642: g++ -c -g -O2 -fno-common conftest.cc >&5
configure:3648: $? = 0
configure:3652: test -z
test ! -s conftest.err
configure:3655: $? = 0
configure:3658: test -s conftest.o
configure:3661: $? = 0
configure:3686: checking dependency style of g++
configure:3776: result: gcc3
configure:5065: Java SDK home is /home/rw33/tmp.d/jdk1.6.0_01
configure:5072: checking for gcj
configure:5103: result: /home/rw33/tmp.d/jdk1.6.0_01/bin/javac
configure:5120: checking for javadoc
configure:5139: found /home/rw33/tmp.d/jdk1.6.0_01/bin/javadoc
configure:5151: result: /home/rw33/tmp.d/jdk1.6.0_01/bin/javadoc
configure:5165: checking for jar
configure:5184: found /home/rw33/tmp.d/jdk1.6.0_01/bin/jar
configure:5196: result: /home/rw33/tmp.d/jdk1.6.0_01/bin/jar
configure:5210: checking for gij
configure:5241: result: /home/rw33/tmp.d/jdk1.6.0_01/bin/java
configure:5255: checking for gcjh
configure:5286: result: /home/rw33/tmp.d/jdk1.6.0_01/bin/javah
configure:5344: checking for gcj
configure:5360: found /usr/bin/gcj
configure:5370: result: gcj
configure:5391: checking dependency style of gcj
configure:5481: result: gcc3
configure:5572: checking for a sed that does not truncate output
configure:5626: result: /bin/sed
configure:5640: checking for ld used by gcc
configure:5707: result: /usr/bin/ld
configure:5716: checking if the linker (/usr/bin/ld) is GNU ld
configure:5731: result: yes
configure:5736: checking for /usr/bin/ld option to reload object files
configure:5743: result: -r
configure:5761: checking for BSD-compatible nm
configure:5810: result: /usr/bin/nm -B
configure:5814: checking whether ln -s works
configure:5818: result: yes
configure:5825: checking how to recognise dependent libraries
configure:6001: result: pass_all
configure:6237: checking how to run the C preprocessor
configure:6272: gcc -E -fno-common conftest.c
configure:6278: $? = 0
configure:6310: gcc -E -fno-common conftest.c
conftest.c:14:28: ac_nonexistent.h: No such file or directory
configure:6316: $? = 1
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
/ end confdefs.h. /
#include
configure:6355: result: gcc -E
configure:6379: gcc -E -fno-common conftest.c
configure:6385: $? = 0
configure:6417: gcc -E -fno-common conftest.c
conftest.c:14:28: ac_nonexistent.h: No such file or directory
configure:6423: $? = 1
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
/ end confdefs.h. /
#include
configure:6467: checking for ANSI C header files
configure:6492: gcc -c -g -O2 -fno-common conftest.c >&5
configure:6498: $? = 0
configure:6502: test -z
test ! -s conftest.err
configure:6505: $? = 0
configure:6508: test -s conftest.o
configure:6511: $? = 0
configure:6597: gcc -o conftest -g -O2 -fno-common conftest.c >&5
configure:6600: $? = 0
configure:6602: ./conftest
configure:6605: $? = 0
configure:6620: result: yes
configure:6644: checking for sys/types.h
configure:6660: gcc -c -g -O2 -fno-common conftest.c >&5
configure:6666: $? = 0
configure:6670: test -z
test ! -s conftest.err
configure:6673: $? = 0
configure:6676: test -s conftest.o
configure:6679: $? = 0
configure:6690: result: yes
configure:6644: checking for sys/stat.h
configure:6660: gcc -c -g -O2 -fno-common conftest.c >&5
configure:6666: $? = 0
configure:6670: test -z
test ! -s conftest.err
configure:6673: $? = 0
configure:6676: test -s conftest.o
configure:6679: $? = 0
configure:6690: result: yes
configure:6644: checking for stdlib.h
configure:6660: gcc -c -g -O2 -fno-common conftest.c >&5
configure:6666: $? = 0
configure:6670: test -z
test ! -s conftest.err
configure:6673: $? = 0
configure:6676: test -s conftest.o
configure:6679: $? = 0
configure:6690: result: yes
configure:6644: checking for string.h
configure:6660: gcc -c -g -O2 -fno-common conftest.c >&5
configure:6666: $? = 0
configure:6670: test -z
test ! -s conftest.err
configure:6673: $? = 0
configure:6676: test -s conftest.o
configure:6679: $? = 0
configure:6690: result: yes
configure:6644: checking for memory.h
configure:6660: gcc -c -g -O2 -fno-common conftest.c >&5
configure:6666: $? = 0
configure:6670: test -z
test ! -s conftest.err
configure:6673: $? = 0
configure:6676: test -s conftest.o
configure:6679: $? = 0
configure:6690: result: yes
configure:6644: checking for strings.h
configure:6660: gcc -c -g -O2 -fno-common conftest.c >&5
configure:6666: $? = 0
configure:6670: test -z
test ! -s conftest.err
configure:6673: $? = 0
configure:6676: test -s conftest.o
configure:6679: $? = 0
configure:6690: result: yes
configure:6644: checking for inttypes.h
configure:6660: gcc -c -g -O2 -fno-common conftest.c >&5
configure:6666: $? = 0
configure:6670: test -z
test ! -s conftest.err
configure:6673: $? = 0
configure:6676: test -s conftest.o
configure:6679: $? = 0
configure:6690: result: yes
configure:6644: checking for stdint.h
configure:6660: gcc -c -g -O2 -fno-common conftest.c >&5
configure:6666: $? = 0
configure:6670: test -z
test ! -s conftest.err
configure:6673: $? = 0
configure:6676: test -s conftest.o
configure:6679: $? = 0
configure:6690: result: yes
configure:6644: checking for unistd.h
configure:6660: gcc -c -g -O2 -fno-common conftest.c >&5
configure:6666: $? = 0
configure:6670: test -z
test ! -s conftest.err
configure:6673: $? = 0
configure:6676: test -s conftest.o
configure:6679: $? = 0
configure:6690: result: yes
configure:6716: checking dlfcn.h usability
configure:6728: gcc -c -g -O2 -fno-common conftest.c >&5
configure:6734: $? = 0
configure:6738: test -z
test ! -s conftest.err
configure:6741: $? = 0
configure:6744: test -s conftest.o
configure:6747: $? = 0
configure:6757: result: yes
configure:6761: checking dlfcn.h presence
configure:6771: gcc -E -fno-common conftest.c
configure:6777: $? = 0
configure:6797: result: yes
configure:6832: checking for dlfcn.h
configure:6839: result: yes
configure:6862: checking how to run the C++ preprocessor
configure:6893: g++ -E -fno-common conftest.cc
configure:6899: $? = 0
configure:6931: g++ -E -fno-common conftest.cc
conftest.cc:25:28: ac_nonexistent.h: No such file or directory
configure:6937: $? = 1
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
/ end confdefs.h. /
#include
configure:6976: result: g++ -E
configure:7000: g++ -E -fno-common conftest.cc
configure:7006: $? = 0
configure:7038: g++ -E -fno-common conftest.cc
conftest.cc:25:28: ac_nonexistent.h: No such file or directory
configure:7044: $? = 1
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
/ end confdefs.h. /
#include
configure:7094: checking the maximum length of command line arguments
configure:7203: result: 32768
configure:7214: checking command to parse /usr/bin/nm -B output from gcc object
configure:7319: g++ -c -g -O2 -fno-common conftest.cc >&5
configure:7322: $? = 0
configure:7326: /usr/bin/nm -B conftest.o sed -n -e 's/^.[ ]([ABCDGIRSTW][ABCDGIRSTW])[ ][ ]_([_A-Za-z][A-Za-z0-9])$/\1 \2 \2/p' > conftest.nm
configure:7329: $? = 0
configure:7381: g++ -o conftest -g -O2 -fno-common conftest.cc conftstm.o >&5
configure:7384: $? = 0
configure:7422: result: ok
configure:7426: checking for objdir
configure:7441: result: .libs
configure:7531: checking for ar
configure:7547: found /usr/bin/ar
configure:7558: result: ar
configure:7611: checking for ranlib
configure:7627: found /usr/bin/ranlib
configure:7638: result: ranlib
configure:7691: checking for strip
configure:7707: found /usr/bin/strip
configure:7718: result: strip
configure:7990: checking if gcc supports -fno-rtti -fno-exceptions
configure:8011: gcc -c -g -O2 -fno-common -fno-rtti -fno-exceptions conftest.c >&5
configure:8015: $? = 0
configure:8025: result: yes
configure:8040: checking for gcc option to produce PIC
configure:8250: result: -fPIC
configure:8258: checking if gcc PIC flag -fPIC works
configure:8279: gcc -c -g -O2 -fno-common -fPIC -DPIC conftest.c >&5
configure:8283: $? = 0
configure:8293: result: yes
configure:8321: checking if gcc static flag -static works
configure:8349: result: yes
configure:8359: checking if gcc supports -c -o file.o
configure:8383: gcc -c -g -O2 -fno-common -o out/conftest2.o conftest.c >&5
configure:8387: $? = 0
configure:8406: result: yes
configure:8432: checking whether the gcc linker (/usr/bin/ld) supports shared libraries
configure:9390: result: yes
configure:9411: checking whether -lc should be explicitly linked in
configure:9416: gcc -c -g -O2 -fno-common conftest.c >&5
configure:9419: $? = 0
configure:9434: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2>&1 grep -lc >/dev/null 2>&1
configure:9437: $? = 0
configure:9449: result: no
configure:9457: checking dynamic linker characteristics
configure:10066: result: GNU/Linux ld.so
configure:10075: checking how to hardcode library paths into programs
configure:10100: result: immediate
configure:10114: checking whether stripping libraries is possible
configure:10119: result: yes
configure:10953: checking if libtool supports shared libraries
configure:10955: result: yes
configure:10958: checking whether to build shared libraries
configure:10979: result: yes
configure:10982: checking whether to build static libraries
configure:10986: result: yes
configure:11078: creating libtool
configure:11666: checking for ld used by g++
configure:11733: result: /usr/bin/ld
configure:11742: checking if the linker (/usr/bin/ld) is GNU ld
configure:11757: result: yes
configure:11808: checking whether the g++ linker (/usr/bin/ld) supports shared libraries
configure:12746: result: yes
configure:12764: g++ -c -g -O2 -fno-common conftest.cpp >&5
configure:12767: $? = 0
configure:12886: checking for g++ option to produce PIC
configure:13160: result: -fPIC
configure:13168: checking if g++ PIC flag -fPIC works
configure:13189: g++ -c -g -O2 -fno-common -fPIC -DPIC conftest.cpp >&5
configure:13193: $? = 0
configure:13203: result: yes
configure:13231: checking if g++ static flag -static works
configure:13259: result: yes
configure:13269: checking if g++ supports -c -o file.o
configure:13293: g++ -c -g -O2 -fno-common -o out/conftest2.o conftest.cpp >&5
configure:13297: $? = 0
configure:13316: result: yes
configure:13342: checking whether the g++ linker (/usr/bin/ld) supports shared libraries
configure:13367: result: yes
configure:13434: checking dynamic linker characteristics
configure:14043: result: GNU/Linux ld.so
configure:14052: checking how to hardcode library paths into programs
configure:14077: result: immediate
configure:17191: checking if gcj supports -fno-rtti -fno-exceptions
configure:17226: result: yes
configure:17241: checking for gcj option to produce PIC
configure:17451: result: -fPIC
configure:17459: checking if gcj PIC flag -fPIC works
configure:17480: gcj -c -g -O2 -fno-common -fPIC conftest.java >&5
configure:17484: $? = 0
configure:17494: result: yes
configure:17522: checking if gcj static flag -static works
configure:17550: result: no
configure:17560: checking if gcj supports -c -o file.o
configure:17584: gcj -c -g -O2 -fno-common -o out/conftest2.o conftest.java >&5
configure:17588: $? = 0
configure:17607: result: yes
configure:17633: checking whether the gcj linker (/usr/bin/ld) supports shared libraries
configure:18591: result: yes
configure:18658: checking dynamic linker characteristics
configure:19267: result: GNU/Linux ld.so
configure:19276: checking how to hardcode library paths into programs
configure:19301: result: immediate
configure:20273: checking whether make sets $(MAKE)
configure:20293: result: yes
configure:20343: checking for ranlib
configure:20370: result: ranlib
configure:20529: checking for python
configure:20547: found /usr/bin/python
configure:20559: result: /usr/bin/python
configure:20579: checking for python version
configure:20586: result: 2.2
configure:20598: checking for python platform
configure:20605: result: linux2
configure:20612: checking for python script directory
configure:20620: result: ${prefix}/lib/python2.2/site-packages
configure:20629: checking for python extension module directory
configure:20637: result: ${exec_prefix}/lib/python2.2/site-packages
configure:20712: checking for docbook2pdf
configure:20741: result: no
configure:20752: checking for docbook2txt
configure:20781: result: no
configure:20792: checking for tclsh
configure:20808: found /usr/bin/tclsh
configure:20818: result: tclsh
configure:20832: checking for guile
configure:20861: result: no
configure:20872: checking for latex
configure:20888: found /usr/bin/latex
configure:20898: result: latex
configure:20912: checking for pdflatex
configure:20928: found /usr/bin/pdflatex
configure:20938: result: pdflatex
configure:20952: checking for doxygen
configure:20968: found /usr/bin/doxygen
configure:20978: result: doxygen
configure:20992: checking for dot
configure:21021: result: no
configure:21055: checking for LIB
configure:21084: result: no
configure:21283: checking for location of HDF4 libraries
configure:21300: result: unknown
configure:21366: checking for location of mxml package
configure:21372: result: unknown
configure:21394: checking for fprintf in -lSystemStubs
configure:21424: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lSystemStubs >&5
conftest.c:32: warning: conflicting types for built-in function `fprintf'
/usr/bin/ld: cannot find -lSystemStubs
collect2: ld returned 1 exit status
configure:21430: $? = 1
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
/ end confdefs.h. /
/ Override any gcc2 internal prototype to avoid an error. /
#ifdef __cplusplus
extern "C"
#endif
/_ We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. _/
char fprintf ();
int
main ()
{
fprintf ();
;
return 0;
}
configure:21456: result: no
configure:21472: checking for log in -lm
configure:21502: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lm >&5
configure:21508: $? = 0
configure:21512: test -z
test ! -s conftest.err
configure:21515: $? = 0
configure:21518: test -s conftest
configure:21521: $? = 0
configure:21534: result: yes
configure:21547: checking for xdr_float in -lrpc
configure:21577: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lrpc -lm >&5
/usr/bin/ld: cannot find -lrpc
collect2: ld returned 1 exit status
configure:21583: $? = 1
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define HAVE_LIBM 1
/ end confdefs.h. /
/ Override any gcc2 internal prototype to avoid an error. /
#ifdef __cplusplus
extern "C"
#endif
/_ We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. _/
char xdr_float ();
int
main ()
{
xdr_float ();
;
return 0;
}
configure:21609: result: no
configure:21621: checking for dlopen in -ldl
configure:21651: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -ldl -lm >&5
configure:21657: $? = 0
configure:21661: test -z
test ! -s conftest.err
configure:21664: $? = 0
configure:21667: test -s conftest
configure:21670: $? = 0
configure:21683: result: yes
configure:21695: checking for gzopen in -lz
configure:21725: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lz -ldl -lm >&5
configure:21731: $? = 0
configure:21735: test -z
test ! -s conftest.err
configure:21738: $? = 0
configure:21741: test -s conftest
configure:21744: $? = 0
configure:21757: result: yes
configure:21769: checking for jpeg_CreateCompress in -ljpeg
configure:21799: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -ljpeg -lz -ldl -lm >&5
configure:21805: $? = 0
configure:21809: test -z
test ! -s conftest.err
configure:21812: $? = 0
configure:21815: test -s conftest
configure:21818: $? = 0
configure:21831: result: yes
configure:21843: checking for SZ_Compress in -lsz
configure:21873: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lsz -ljpeg -lz -ldl -lm >&5
/usr/bin/ld: cannot find -lsz
collect2: ld returned 1 exit status
configure:21879: $? = 1
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define HAVE_LIBM 1
#define HAVE_LIBDL 1
#define HAVE_LIBZ 1
#define HAVE_LIBJPEG 1
/ end confdefs.h. /
/ Override any gcc2 internal prototype to avoid an error. /
#ifdef __cplusplus
extern "C"
#endif
/_ We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. _/
char SZ_Compress ();
int
main ()
{
SZ_Compress ();
;
return 0;
}
configure:21905: result: no
configure:21917: checking for Hopen in -ldf
configure:21947: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -ldf -ljpeg -lz -ldl -lm >&5
/usr/bin/ld: cannot find -ldf
collect2: ld returned 1 exit status
configure:21953: $? = 1
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define HAVE_LIBM 1
#define HAVE_LIBDL 1
#define HAVE_LIBZ 1
#define HAVE_LIBJPEG 1
/ end confdefs.h. /
/ Override any gcc2 internal prototype to avoid an error. /
#ifdef __cplusplus
extern "C"
#endif
/_ We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. _/
char Hopen ();
int
main ()
{
Hopen ();
;
return 0;
}
configure:21979: result: no
configure:21991: checking for SDcreate in -lmfhdf
configure:22021: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lmfhdf -ljpeg -lz -ldl -lm >&5
/usr/bin/ld: cannot find -lmfhdf
collect2: ld returned 1 exit status
configure:22027: $? = 1
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define HAVE_LIBM 1
#define HAVE_LIBDL 1
#define HAVE_LIBZ 1
#define HAVE_LIBJPEG 1
/ end confdefs.h. /
/ Override any gcc2 internal prototype to avoid an error. /
#ifdef __cplusplus
extern "C"
#endif
/_ We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. _/
char SDcreate ();
int
main ()
{
SDcreate ();
;
return 0;
}
configure:22053: result: no
configure:22065: checking for H5open in -lhdf5
configure:22095: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lhdf5 -ljpeg -lz -ldl -lm >&5
configure:22101: $? = 0
configure:22105: test -z
test ! -s conftest.err
configure:22108: $? = 0
configure:22111: test -s conftest
configure:22114: $? = 0
configure:22127: result: yes
configure:22139: checking for xmlParseDocument in -lxml2
configure:22169: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
configure:22175: $? = 0
configure:22179: test -z
test ! -s conftest.err
configure:22182: $? = 0
configure:22185: test -s conftest
configure:22188: $? = 0
configure:22201: result: yes
configure:22213: checking for ANSI C header files
configure:22366: result: yes
configure:22382: checking for stdlib.h
configure:22387: result: yes
configure:22382: checking for string.h
configure:22387: result: yes
configure:22528: checking for an ANSI C-conforming const
configure:22595: gcc -c -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common conftest.c >&5
conftest.c: In function `main':
conftest.c:60: warning:`t' might be used uninitialized in this function
conftest.c:78: warning: `b' might be used uninitialized in this function
configure:22601: $? = 0
configure:22605: test -z
test ! -s conftest.err
configure:22608: $? = 0
configure:22611: test -s conftest.o
configure:22614: $? = 0
configure:22625: result: yes
configure:22635: checking for size_t
configure:22659: gcc -c -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common conftest.c >&5
configure:22665: $? = 0
configure:22669: test -z
test ! -s conftest.err
configure:22672: $? = 0
configure:22675: test -s conftest.o
configure:22678: $? = 0
configure:22689: result: yes
configure:22701: checking whether struct tm is in sys/time.h or time.h
configure:22724: gcc -c -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common conftest.c >&5
conftest.c: In function`main':
conftest.c:40: warning: statement with no effect
configure:22730: $? = 0
configure:22734: test -z
test ! -s conftest.err
configure:22737: $? = 0
configure:22740: test -s conftest.o
configure:22743: $? = 0
configure:22754: result: time.h
configure:22770: checking for stdlib.h
configure:22775: result: yes
configure:22915: checking for GNU libc compatible malloc
configure:22944: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
configure:22947: $? = 0
configure:22949: ./conftest
./conftest: error while loading shared libraries: libhdf5.so.0: cannot open shared object file: No such file or directory
configure:22952: $? = 127
configure: program exited with status 127
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define HAVE_LIBM 1
#define HAVE_LIBDL 1
#define HAVE_LIBZ 1
#define HAVE_LIBJPEG 1
#define HAVE_LIBHDF5 1
#define HAVE_LIBXML2 1
#define STDC_HEADERS 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_STDLIB_H 1
/ end confdefs.h. /
#if STDC_HEADERS HAVE_STDLIB_H
# include
#else
char *malloc ();
#endif
int
main ()
{
exit (malloc (0) ? 0 : 1);
;
return 0;
}
configure:22966: result: no
configure:22996: checking for working memcmp
configure:23044: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
configure:23047: $? = 0
configure:23049: ./conftest
./conftest: error while loading shared libraries: libhdf5.so.0: cannot open shared object file: No such file or directory
configure:23052: $? = 127
configure: program exited with status 127
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define HAVE_LIBM 1
#define HAVE_LIBDL 1
#define HAVE_LIBZ 1
#define HAVE_LIBJPEG 1
#define HAVE_LIBHDF5 1
#define HAVE_LIBXML2 1
#define STDC_HEADERS 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_STDLIB_H 1
#define HAVE_MALLOC 0
#define malloc rpl_malloc
/ end confdefs.h. /
#include
#if HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
#if HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
#if STDC_HEADERS
# include
# include
#else
# if HAVE_STDLIB_H
# include
# endif
#endif
#if HAVE_STRING_H
# if !STDC_HEADERS && HAVE_MEMORY_H
# include
# endif
# include
#endif
#if HAVE_STRINGS_H
# include
#endif
#if HAVE_INTTYPES_H
# include
#else
# if HAVE_STDINT_H
# include
# endif
#endif
#if HAVE_UNISTD_H
# include
#endif
int
main ()
{
/ Some versions of memcmp are not 8-bit clean. /
char c0 # 0x40, c10x80, c2 = 0x81;
if (memcmp(&c0, &c2, 1) >= 0 memcmp(&c1, &c2, 1) >= 0)
exit (1);
/_ The Next x86 OpenStep bug shows up only when comparing 16 bytes
or more and with at least one buffer not starting on a 4-byte boundary.
William Lewis provided this test program. _/
{
char foo[21];
char bar[21];
int i;
for (i = 0; i < 4; i++)
{
char *a = foo + i;
char *b = bar + i;
strcpy (a, "--------01111111");
strcpy (b, "--------10000000");
if (memcmp (a, b, 16) >= 0)
exit (1);
}
exit (0);
}
;
return 0;
}
configure:23066: result: no
configure:23077: checking whether time.h and sys/time.h may both be included
configure:23102: gcc -c -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common conftest.c >&5
configure:23108: $? = 0
configure:23112: test -z
test ! -s conftest.err
configure:23115: $? = 0
configure:23118: test -s conftest.o
configure:23121: $? = 0
configure:23132: result: yes
configure:23149: checking for stdlib.h
configure:23154: result: yes
configure:23158: checking sys/time.h usability
configure:23170: gcc -c -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common conftest.c >&5
configure:23176: $? = 0
configure:23180: test -z
test ! -s conftest.err
configure:23183: $? = 0
configure:23186: test -s conftest.o
configure:23189: $? = 0
configure:23199: result: yes
configure:23203: checking sys/time.h presence
configure:23213: gcc -E -fno-common conftest.c
configure:23219: $? = 0
configure:23239: result: yes
configure:23274: checking for sys/time.h
configure:23281: result: yes
configure:23149: checking for unistd.h
configure:23154: result: yes
configure:23298: checking for alarm
configure:23355: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
configure:23361: $? = 0
configure:23365: test -z
test ! -s conftest.err
configure:23368: $? = 0
configure:23371: test -s conftest
configure:23374: $? = 0
configure:23386: result: yes
configure:23396: checking for working mktime
configure:23572: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
configure:23575: $? = 0
configure:23577: ./conftest
./conftest: error while loading shared libraries: libhdf5.so.0: cannot open shared object file: No such file or directory
configure:23580: $? = 127
configure: program exited with status 127
configure: failed program was:
/ confdefs.h. /
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE "nexus"
#define VERSION "4.0rc3"
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
#endif
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define HAVE_LIBM 1
#define HAVE_LIBDL 1
#define HAVE_LIBZ 1
#define HAVE_LIBJPEG 1
#define HAVE_LIBHDF5 1
#define HAVE_LIBXML2 1
#define STDC_HEADERS 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_STDLIB_H 1
#define HAVE_MALLOC 0
#define malloc rpl_malloc
#define TIME_WITH_SYS_TIME 1
#define HAVE_STDLIB_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_ALARM 1
/ end confdefs.h. /
/ Test program from Paul Eggert and Tony Leneis. /
#if TIME_WITH_SYS_TIME
# include <sys/time.h>
# include
#else
# if HAVE_SYS_TIME_H
# include <sys/time.h>
# else
# include
# endif
#endif
#if HAVE_STDLIB_H
# include
#endif
#if HAVE_UNISTD_H
# include
#endif
#if !HAVE_ALARM
# define alarm(X) / empty /
#endif
/_ Work around redefinition to rplputenv by other config tests. /
#undef putenv
static time_t time_t_max;
static time_t time_t_min;
/ Values we'll use to set the TZ environment variable. /
static char *tz_strings[] = {
(char *) 0, "TZ=GMT0", "TZ=JST-9",
"TZ=EST+3EDT+2,M10.1.0/00:00:00,M2.3.0/00:00:00"
};
#define N_STRINGS (sizeof (tz_strings) / sizeof (tz_strings[0]))
/_ Fail if mktime fails to convert a date in the spring-forward gap.
Based on a problem report from Andreas Jaeger. _/
static void
spring_forward_gap ()
{
/ glibc (up to about 1998-10-07) failed this test. /
struct tm tm;
/_ Use the portable POSIX.1 specification "TZ=PST8PDT,M4.1.0,M10.5.0"
instead of "TZ=America/Vancouver" in order to detect the bug even
on systems that don't support the Olson extension, or don't have the
full zoneinfo tables installed. _/
putenv ("TZ=PST8PDT,M4.1.0,M10.5.0");
tm.tm_year = 98;
tm.tm_mon = 3;
tm.tm_mday = 5;
tm.tm_hour = 2;
tm.tm_min = 0;
tm.tm_sec = 0;
tm.tm_isdst = -1;
if (mktime (&tm) == (time_t)-1)
exit (1);
}
static void
mktime_test1 (now)
time_t now;
{
struct tm *lt;
if ((lt = localtime (&now)) && mktime (lt) != now)
exit (1);
}
static void
mktime_test (now)
time_t now;
{
mktime_test1 (now);
mktime_test1 ((time_t) (time_t_max - now));
mktime_test1 ((time_t) (time_t_min + now));
}
static void
irix_6_4_bug ()
{
/ Based on code from Ariel Faigon. /
struct tm tm;
tm.tm_year = 96;
tm.tm_mon = 3;
tm.tm_mday = 0;
tm.tm_hour = 0;
tm.tm_min = 0;
tm.tm_sec = 0;
tm.tm_isdst = -1;
mktime (&tm);
if (tm.tm_mon != 2 tm.tm_mday != 31)
exit (1);
}
static void
bigtime_test (j)
int j;
{
struct tm tm;
time_t now;
tm.tm_year # tm.tm_montm.tm_mday # tm.tm_hourtm.tm_min # tm.tm_secj;
now = mktime (&tm);
if (now != (time_t) -1)
{
struct tm *lt = localtime (&now);
if (! (lt
&& lt->tm_year == tm.tm_year
&& lt->tm_mon == tm.tm_mon
&& lt->tm_mday == tm.tm_mday
&& lt->tm_hour == tm.tm_hour
&& lt->tm_min == tm.tm_min
&& lt->tm_sec == tm.tm_sec
&& lt->tm_yday == tm.tm_yday
&& lt->tm_wday == tm.tm_wday
&& ((lt->tm_isdst < 0 ? -1 : 0 < lt->tm_isdst)
== (tm.tm_isdst < 0 ? -1 : 0 < tm.tm_isdst))))
exit (1);
}
}
int
main ()
{
time_t t, delta;
int i, j;
/_ This test makes some buggy mktime implementations loop.
Give up after 60 seconds; a mktime slower than that
isn't worth using anyway. _/
alarm (60);
for (time_t_max = 1; 0 < time_t_max; time_t_max *= 2)
continue;
time_t_max--;
if ((time_t) -1 < 0)
for (time_t_min = -1; (time_t) (time_t_min * 2) < 0; time_t_min *= 2)
continue;
delta = time_tmax / 997; / a suitable prime number _/
for (i = 0; i < N_STRINGS; i++)
{
if (tz_strings[i])
putenv (tz_strings[i]);
for (t = 0; t <= time_t_max - delta; t += delta)
mktime_test (t);
mktime_test ((time_t) 1);
mktime_test ((time_t) (60 * 60));
mktime_test ((time_t) (60 * 60 * 24));
for (j = 1; 0 < j; j *= 2)
bigtime_test (j);
bigtime_test (j - 1);
}
irix_6_4_bug ();
spring_forward_gap ();
exit (0);
}
configure:23594: result: no
configure:23611: checking for strftime
configure:23668: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
configure:23674: $? = 0
configure:23678: test -z
test ! -s conftest.err
configure:23681: $? = 0
configure:23684: test -s conftest
configure:23687: $? = 0
configure:23699: result: yes
configure:23793: checking for ftime
configure:23850: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
configure:23856: $? = 0
configure:23860: test -z
test ! -s conftest.err
configure:23863: $? = 0
configure:23866: test -s conftest
configure:23869: $? = 0
configure:23881: result: yes
configure:23793: checking for memset
configure:23850: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
conftest.c:68: warning: conflicting types for built-in function `memset'
configure:23856: $? = 0
configure:23860: test -z
test ! -s conftest.err
configure:23863: $? = 0
configure:23866: test -s conftest
configure:23869: $? = 0
configure:23881: result: yes
configure:23793: checking for strchr
configure:23850: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
conftest.c:69: warning: conflicting types for built-in function`strchr'
configure:23856: $? = 0
configure:23860: test -z
test ! -s conftest.err
configure:23863: $? = 0
configure:23866: test -s conftest
configure:23869: $? = 0
configure:23881: result: yes
configure:23793: checking for strdup
configure:23850: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
configure:23856: $? = 0
configure:23860: test -z
test ! -s conftest.err
configure:23863: $? = 0
configure:23866: test -s conftest
configure:23869: $? = 0
configure:23881: result: yes
configure:23793: checking for strrchr
configure:23850: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
conftest.c:71: warning: conflicting types for built-in function `strrchr'
configure:23856: $? = 0
configure:23860: test -z
test ! -s conftest.err
configure:23863: $? = 0
configure:23866: test -s conftest
configure:23869: $? = 0
configure:23881: result: yes
configure:23793: checking for strstr
configure:23850: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
conftest.c:72: warning: conflicting types for built-in function`strstr'
configure:23856: $? = 0
configure:23860: test -z
test ! -s conftest.err
configure:23863: $? = 0
configure:23866: test -s conftest
configure:23869: $? = 0
configure:23881: result: yes
configure:23793: checking for tzset
configure:23850: gcc -o conftest -g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment -fno-common -L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib conftest.c -lxml2 -lhdf5 -ljpeg -lz -ldl -lm >&5
configure:23856: $? = 0
configure:23860: test -z
test ! -s conftest.err
configure:23863: $? = 0
configure:23866: test -s conftest
configure:23869: $? = 0
configure:23881: result: yes
configure:24411: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by NeXus Library config.status 4.0rc3, which was
generated by GNU Autoconf 2.59. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on grid-data.rl.ac.uk
config.status:862: creating test/Makefile
config.status:862: creating test/atlocal
config.status:862: creating Makefile
config.status:862: creating nexus.spec
config.status:862: creating build_rpm
config.status:862: creating include/Makefile
config.status:862: creating src/Makefile
config.status:862: creating applications/Makefile
config.status:862: creating applications/NXdir/Makefile
config.status:862: creating applications/NXsummary/Makefile
config.status:862: creating applications/NXtranslate/Makefile
config.status:862: creating applications/NXtranslate/IPNS_CPP/Makefile
config.status:862: creating applications/NXtranslate/FRM2/Makefile
config.status:862: creating applications/NXtranslate/opengenie/Makefile
config.status:862: creating applications/NXtranslate/text_collist/Makefile
config.status:862: creating applications/NXtranslate/text_plain/Makefile
config.status:862: creating applications/NXtranslate/text_xml/Makefile
config.status:862: creating applications/NXtranslate/sns_histogram/Makefile
config.status:862: creating applications/NXtranslate/loopy/Makefile
config.status:862: creating applications/NXtranslate/binary/Makefile
config.status:862: creating applications/NXtranslate/spec/Makefile
config.status:862: creating applications/NXtranslate/esrf_edf/Makefile
config.status:862: creating applications/NXtranslate/docs/Makefile
config.status:862: creating examples/Makefile
config.status:862: creating doc/Makefile
config.status:862: creating doc/doxygen/Makefile
config.status:862: creating doc/doxygen/Doxyfile
config.status:862: creating doc/api/Makefile
config.status:862: creating doc/nxdict/Makefile
config.status:862: creating doc/tech_ref/Makefile
config.status:862: creating bindings/Makefile
config.status:862: creating bindings/f77/Makefile
config.status:862: creating bindings/f90/Makefile
config.status:862: creating bindings/java/Makefile
config.status:862: creating bindings/swig/Makefile
config.status:862: creating contrib/Makefile
config.status:862: creating contrib/applications/Makefile
config.status:862: creating contrib/bindings/Makefile
config.status:862: creating scripts/Makefile
config.status:862: creating scripts/nexus.pc
config.status:862: creating scripts/nxbuild
config.status:966: creating include/nxconfig.h
config.status:1142: include/nxconfig.h is unchanged
config.status:1322: executing depfiles commands
config.status:1322: executing test/atconfig commands
configure:25934: result:
Configuration (NeXus):
Source code location: .
Version: 4.0rc3
Compiler: gcc,g++,,
build:
NeXus with:
HDF4 support: no
found version
HDF5 support: yes
XML support: no
bindings:
F77 : no (--with-f77=)
F90/F95 : no (--with-f90=)
JAVA: yes (--with-java-home=/home/rw33/tmp.d/jdk1.6.0_01)
SWIG: no
Please check whether the configuration I detected matches what you would
like to have. If not, re-run configure adding the appropriate --with option
or setting the relevant environment variable.
For a list of available options type ./configure --help
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=i686-redhat-linux-gnu
ac_cv_build_alias=i686-redhat-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CC_set=set
ac_cv_env_CC_value=gcc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=g++
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_exeext=
ac_cv_func_alarm=yes
ac_cv_func_ftime=yes
ac_cv_func_malloc_0_nonnull=no
ac_cv_func_memcmp_working=no
ac_cv_func_memset=yes
ac_cv_func_strchr=yes
ac_cv_func_strdup=yes
ac_cv_func_strftime=yes
ac_cv_func_strrchr=yes
ac_cv_func_strstr=yes
ac_cv_func_tzset=yes
ac_cv_func_working_mktime=no
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_host=i686-redhat-linux-gnu
ac_cv_host_alias=i686-redhat-linux-gnu
ac_cv_lib_SystemStubs_fprintf=no
ac_cv_lib_df_Hopen=no
ac_cv_lib_dl_dlopen=yes
ac_cv_lib_hdf5_H5open=yes
ac_cv_lib_jpeg_jpeg_CreateCompress=yes
ac_cv_lib_m_log=yes
ac_cv_lib_mfhdf_SDcreate=no
ac_cv_lib_rpc_xdr_float=no
ac_cv_lib_sz_SZ_Compress=no
ac_cv_lib_xml2_xmlParseDocument=yes
ac_cv_lib_z_gzopen=yes
ac_cv_objext=o
ac_cv_path_JAR=/home/rw33/tmp.d/jdk1.6.0_01/bin/jar
ac_cv_path_JAVA=/home/rw33/tmp.d/jdk1.6.0_01/bin/java
ac_cv_path_JAVAC=/home/rw33/tmp.d/jdk1.6.0_01/bin/javac
ac_cv_path_JAVADOC=/home/rw33/tmp.d/jdk1.6.0_01/bin/javadoc
ac_cv_path_JAVAH=/home/rw33/tmp.d/jdk1.6.0_01/bin/javah
ac_cv_path_PYTHON=/usr/bin/python
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_DOXYGEN=doxygen
ac_cv_prog_GCJ=gcj
ac_cv_prog_LATEX=latex
ac_cv_prog_PDFLATEX=pdflatex
ac_cv_prog_TCLSH=tclsh
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_stdc=
ac_cv_prog_cxx_g=yes
ac_cv_prog_egrep='grep -E'
ac_cv_prog_make_make_set=yes
ac_cv_struct_tm=time.h
ac_cv_target=i686-redhat-linux-gnu
ac_cv_target_alias=i686-redhat-linux-gnu
ac_cv_type_size_t=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_GCJ_dependencies_compiler_type=gcc3
am_cv_python_platform=linux2
am_cv_python_pyexecdir='${exec_prefix}/lib/python2.2/site-packages'
am_cv_python_pythondir='${prefix}/lib/python2.2/site-packages'
am_cv_python_version=2.2
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_SED=/bin/sed
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_GCJ=yes
lt_cv_prog_compiler_rtti_exceptions=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sys_global_symbolpipe='sed -n -e '_s/^. [ ][ ]_([_A-Za-z][A-Za-z0-9])$/\1 \2 \2/p'*'
lt_cv_sys_global_symbol_to_c_nameaddress='sed -n -e '*s/^: ([^ ]) $/ {\"\1\", (ltptr) 0},/p'_ -e '*s/^[BCDEGRST] ([^ ]) ([^ ]_)$/ {"\2", (lt_ptr) &\2},/p'*'
lt_cv_sys_global_symbol_tocdecl='sed -n -e 's/^. .\ (.)$/extern int \1;/p'_'
lt_cv_sys_max_cmd_len=32768
lt_lt_cv_prog_compiler_c_o='"yes"'
lt_lt_cv_prog_compiler_c_o_CXX='"yes"'
lt_lt_cv_prog_compiler_c_o_GCJ='"yes"'
lt_lt_cv_sys_global_symbolpipe='"sed -n -e '*s/^.[ ]([ABCDGIRSTW][ABCDGIRSTW])[ ][ ]([_A-Za-z][A-Za-z0-9])\$/\1 \2 \2/p'*"'
lt_lt_cv_sys_global_symbol_to_c_nameaddress='"sed -n -e '*s/^: ([^ ]) \$/ {\"\1\", (ltptr) 0},/p'_ -e '*s/^[BCDEGRST] ([^ ]) ([^ ]_)\$/ {\"\2\", (lt_ptr) \&\2},/p'*"'
lt_lt_cv_sys_global_symbol_tocdecl='"sed -n -e 's/^. .\ (.)\$/extern int \1;/p'_"'
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='aclocal-1.6'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /home/rw33/tmp.d/nexus-4.0rc3/config/missing --run tar'
AR='ar'
AUTOCONF='autoconf'
AUTOHEADER='autoheader'
AUTOM4TE='${SHELL} /home/rw33/tmp.d/nexus-4.0rc3/config/missing --run autom4te'
AUTOMAKE='automake-1.6 -a -c'
AWK='gawk'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment'
CPP='gcc -E'
CPPFLAGS=' -fno-common'
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2 -Wall -Wno-unused-variable -Wno-sign-compare -Wno-comment'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DISTRIBUTION='Red Hat Enterprise Linux ES release 3 (Taroon Update 8)'
DOCBOOK2PDF=''
DOCBOOK2TXT=''
DOT=''
DOXYGEN='doxygen'
ECHO='echo'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='grep -E'
EXEEXT=''
F77=''
FC=''
FCFLAGS=' '
FCLIBS=''
FFLAGS=''
FLIBS=''
GCJ='gcj'
GCJDEPMODE='depmode=gcc3'
GCJFLAGS='-g -O2'
GUILE=''
GUILEROOT=''
H4ROOT=''
H5ROOT='/home/rw33/tmp.d/hdf5-1.6.5/hdf5/'
HAVE_DOCBOOK_FALSE=''
HAVE_DOCBOOK_TRUE='#'
HAVE_DOT_FALSE=''
HAVE_DOT_TRUE='#'
HAVE_DOXYGEN_FALSE='#'
HAVE_DOXYGEN_TRUE=''
HAVE_F77_FALSE=''
HAVE_F77_TRUE='#'
HAVE_F90_FALSE=''
HAVE_F90_TRUE='#'
HAVE_GUILE_FALSE=''
HAVE_GUILE_TRUE='#'
HAVE_HDF4_FALSE=''
HAVE_HDF4_TRUE='#'
HAVE_HDF5_FALSE='#'
HAVE_HDF5_TRUE=''
HAVE_JAVAC_FALSE='#'
HAVE_JAVAC_TRUE=''
HAVE_JAVADOC_FALSE='#'
HAVE_JAVADOC_TRUE=''
HAVE_JAVA_FALSE='#'
HAVE_JAVA_TRUE=''
HAVE_LATEX_FALSE='#'
HAVE_LATEX_TRUE=''
HAVE_LIBXML2_FALSE='#'
HAVE_LIBXML2_TRUE=''
HAVE_MS_LIB_FALSE=''
HAVE_MS_LIB_TRUE='#'
HAVE_MZSCHEME_FALSE=''
HAVE_MZSCHEME_TRUE='#'
HAVE_OPENGENIE_FALSE=''
HAVE_OPENGENIE_TRUE='#'
HAVE_PDFLATEX_FALSE='#'
HAVE_PDFLATEX_TRUE=''
HAVE_PYTHON_FALSE=''
HAVE_PYTHON_TRUE='#'
HAVE_SWIG_FALSE=''
HAVE_SWIG_TRUE='#'
HAVE_TCL_FALSE=''
HAVE_TCL_TRUE='#'
HAVE_XML_FALSE=''
HAVE_XML_TRUE='#'
HDF4_CPPFLAGS=''
HDF4_LDFLAGS=''
HDF5_CPPFLAGS='-I/home/rw33/tmp.d/hdf5-1.6.5/hdf5//include -DHDF5'
HDF5_LDFLAGS='-lhdf5 -lz'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s'
JAR='/home/rw33/tmp.d/jdk1.6.0_01/bin/jar'
JAVA='/home/rw33/tmp.d/jdk1.6.0_01/bin/java'
JAVAC='/home/rw33/tmp.d/jdk1.6.0_01/bin/javac'
JAVACFLAGS=''
JAVADOC='/home/rw33/tmp.d/jdk1.6.0_01/bin/javadoc'
JAVAH='/home/rw33/tmp.d/jdk1.6.0_01/bin/javah'
JAVAINCLUDE='-I/home/rw33/tmp.d/jdk1.6.0_01/include -I/home/rw33/tmp.d/jdk1.6.0_01/include/linux'
LATEX='latex'
LDFLAGS='-L/home/rw33/tmp.d/hdf5-1.6.5/hdf5//lib -L/usr/local/lib'
LIBG2C=''
LIBOBJS=' malloc$U.o memcmp$U.o mktime$U.o'
LIBS='-lxml2 -lhdf5 -ljpeg -lz -ldl -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIBXML2_CFLAGS='xml2-config --cflags'
LN_S='ln -s'
LTLIBOBJS=' malloc$U.lo memcmp$U.lo mktime$U.lo'
MAKEINFO='${SHELL} /home/rw33/tmp.d/nexus-4.0rc3/config/missing --run makeinfo'
MINGW_MSYS_FALSE=''
MINGW_MSYS_TRUE='#'
MS_LIB=''
MXMLROOT=''
NXDOCDIR='${prefix}/nexus/doc'
NXEXAMPLEDIR='${prefix}/nexus/examples'
NXTESTDIR='${prefix}/nexus/tests'
OBJEXT='o'
OPENGENIEROOT=''
PACKAGE='nexus'
PACKAGE_BUGREPORT='nexus-developers@nexusformat.org'
PACKAGE_NAME='NeXus Library'
PACKAGE_RELEASE='1'
PACKAGE_STRING='NeXus Library 4.0rc3'
PACKAGE_TARNAME='nexus'
PACKAGE_VERSION='4.0rc3'
PATH_SEPARATOR=':'
PDFLATEX='pdflatex'
PYTHON='/usr/bin/python'
PYTHONROOT=''
PYTHON_EXEC_PREFIX='${exec_prefix}'
PYTHON_PLATFORM='linux2'
PYTHON_PREFIX='${prefix}'
PYTHON_VERSION='2.2'
RANLIB='ranlib'
SET_MAKE=''
SHARED_LDFLAGS=''
SHELL='/bin/sh'
STRIP='strip'
SWGUILEFLAGS=''
SWIG=''
TCLROOT=''
TCLSH='tclsh'
VERSION='4.0rc3'
XML_CPPFLAGS=''
XML_LDFLAGS=''
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_CXX=''
ac_ct_F77=''
ac_ct_FC=''
ac_ct_RANLIB='ranlib'
ac_ct_STRIP='strip'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__fastdepGCJ_FALSE='#'
am__fastdepGCJ_TRUE=''
am__include='include'
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='i686-redhat-linux-gnu'
build_alias=''
build_cpu='i686'
build_os='linux-gnu'
build_vendor='redhat'
datadir='${prefix}/share'
exec_prefix='${prefix}'
host='i686-redhat-linux-gnu'
host_alias=''
host_cpu='i686'
host_os='linux-gnu'
host_vendor='redhat'
includedir='${prefix}/include'
infodir='${prefix}/info'
install_sh='/home/rw33/tmp.d/nexus-4.0rc3/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localstatedir='${prefix}/var'
mandir='${prefix}/man'
mkdir_p='mkdir -p --'
oldincludedir='/usr/include'
pkgpyexecdir='${pyexecdir}/nexus'
pkgpythondir='${pythondir}/nexus'
prefix='/home/rw33/tmp.d/nexus-4rc3-dist/'
program_transform_name='s,x,x,'
pyexecdir='${exec_prefix}/lib/python2.2/site-packages'
pythondir='${prefix}/lib/python2.2/site-packages'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target='i686-redhat-linux-gnu'
target_alias=''
target_cpu='i686'
target_os='linux-gnu'
target_vendor='redhat'
## ----------- ##
## confdefs.h. ##
## ----------- ##
#define HAVE_ALARM 1
#define HAVE_DLFCN_H 1
#define HAVE_FTIME 1
#define HAVE_INTTYPES_H 1
#define HAVE_LIBDL 1
#define HAVE_LIBHDF5 1
#define HAVE_LIBJPEG 1
#define HAVE_LIBM 1
#define HAVE_LIBXML2 1
#define HAVE_LIBZ 1
#define HAVE_MALLOC 0
#define HAVE_MEMORY_H 1
#define HAVE_MEMSET 1
#define HAVE_STDINT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRCHR 1
#define HAVE_STRDUP 1
#define HAVE_STRFTIME 1
#define HAVE_STRINGS_H 1
#define HAVE_STRING_H 1
#define HAVE_STRING_H 1
#define HAVE_STRRCHR 1
#define HAVE_STRSTR 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_TZSET 1
#define HAVE_UNISTD_H 1
#define HAVE_UNISTD_H 1
#define PACKAGE "nexus"
#define PACKAGE_BUGREPORT "nexus-developers@nexusformat.org"
#define PACKAGE_NAME "NeXus Library"
#define PACKAGE_STRING "NeXus Library 4.0rc3"
#define PACKAGE_TARNAME "nexus"
#define PACKAGE_VERSION "4.0rc3"
#define STDC_HEADERS 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define VERSION "4.0rc3"
#define malloc rpl_malloc
#endif
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;
configure: exit 0
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by NeXus Library config.status 4.0rc3, which was
generated by GNU Autoconf 2.59. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on grid-data.rl.ac.uk
config.status:862: creating test/Makefile
config.status:862: creating test/atlocal
config.status:862: creating Makefile
config.status:862: creating nexus.spec
config.status:862: creating build_rpm
config.status:862: creating include/Makefile
config.status:862: creating src/Makefile
config.status:862: creating applications/Makefile
config.status:862: creating applications/NXdir/Makefile
config.status:862: creating applications/NXsummary/Makefile
config.status:862: creating applications/NXtranslate/Makefile
config.status:862: creating applications/NXtranslate/IPNS_CPP/Makefile
config.status:862: creating applications/NXtranslate/FRM2/Makefile
config.status:862: creating applications/NXtranslate/opengenie/Makefile
config.status:862: creating applications/NXtranslate/text_collist/Makefile
config.status:862: creating applications/NXtranslate/text_plain/Makefile
config.status:862: creating applications/NXtranslate/text_xml/Makefile
config.status:862: creating applications/NXtranslate/sns_histogram/Makefile
config.status:862: creating applications/NXtranslate/loopy/Makefile
config.status:862: creating applications/NXtranslate/binary/Makefile
config.status:862: creating applications/NXtranslate/spec/Makefile
config.status:862: creating applications/NXtranslate/esrf_edf/Makefile
config.status:862: creating applications/NXtranslate/docs/Makefile
config.status:862: creating examples/Makefile
config.status:862: creating doc/Makefile
config.status:862: creating doc/doxygen/Makefile
config.status:862: creating doc/doxygen/Doxyfile
config.status:862: creating doc/api/Makefile
config.status:862: creating doc/nxdict/Makefile
config.status:862: creating doc/tech_ref/Makefile
config.status:862: creating bindings/Makefile
config.status:862: creating bindings/f77/Makefile
config.status:862: creating bindings/f90/Makefile
config.status:862: creating bindings/java/Makefile
config.status:862: creating bindings/swig/Makefile
config.status:862: creating contrib/Makefile
config.status:862: creating contrib/applications/Makefile
config.status:862: creating contrib/bindings/Makefile
config.status:862: creating scripts/Makefile
config.status:862: creating scripts/nexus.pc
config.status:862: creating scripts/nxbuild
config.status:966: creating include/nxconfig.h
config.status:1142: include/nxconfig.h is unchanged
config.status:1322: executing depfiles commands
config.status:1322: executing test/atconfig commands
stuartcampbell commented 10 years ago

Original reporter: FreddieAkeroyd

Hi,

The test that failed was for NXsummary and was due to the LIBXML2 library on ES release 3 not have "LIBXML2 tree support". The test program has now been updated to handle this case better (#72, [933]) - thank you for checking the library for us

Regards,

Freddie