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nf-core
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airrflow
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
https://nf-co.re/airrflow
MIT License
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34
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Diversity reports
#297
ggabernet
closed
8 months ago
1
Update immcantation container
#296
ggabernet
closed
8 months ago
1
Fix sequence plot in airrflow report
#295
ggabernet
closed
9 months ago
1
merge template updates
#294
ggabernet
closed
9 months ago
1
clonal_threshold accepts multiple values in nextflow_schema.json
#293
adamrtalbot
closed
9 months ago
5
Invalid nextflow_schema.json using list type.
#292
adamrtalbot
closed
9 months ago
0
Important! Template update for nf-core/tools v2.11.1
#291
nf-core-bot
closed
9 months ago
0
Important! Template update for nf-core/tools v2.11
#290
nf-core-bot
closed
9 months ago
1
Cellranger vdj
#289
mapo9
closed
7 months ago
8
fixed comment im changeo_convertdb_fasta
#288
mapo9
closed
8 months ago
2
Remove FilterQuality silent fail
#287
ggabernet
closed
10 months ago
1
Apply reviews
#286
ggabernet
closed
11 months ago
1
Missing output file(s) `*_R1_primers-pass.fastq`
#285
LiuH2020
closed
11 months ago
3
Use cached reference data by default
#284
ggabernet
closed
11 months ago
1
fix validate params
#283
ggabernet
closed
11 months ago
1
Release 3.2.0
#282
ggabernet
closed
11 months ago
1
small fixes
#281
ggabernet
closed
11 months ago
1
Important! Template update for nf-core/tools v2.10
#280
nf-core-bot
closed
11 months ago
0
merge nf-core tools template update
#279
ggabernet
closed
1 year ago
1
Update to Enchantr 0.1.7
#278
ggabernet
closed
11 months ago
3
Analyzing BCR Rep-Seq Data in nf-core/airrflow Without Primer Information
#277
pengjiao
closed
11 months ago
2
Short term fix issues Dowser singularity container
#276
ggabernet
closed
1 year ago
1
test data failing
#275
andreiprodan
closed
11 months ago
3
Imgt url fix
#274
mdeboth
closed
1 year ago
2
IMGT/GENE-DB downloads failing
#273
mdeboth
closed
1 year ago
2
Report findthreshold should report chosen threshold
#272
ggabernet
opened
1 year ago
0
samplesheet check make character
#271
ggabernet
opened
1 year ago
0
Important! Template update for nf-core/tools v2.9
#270
nf-core-bot
closed
1 year ago
1
Update EnchantR to 0.1.3
#269
ggabernet
closed
1 year ago
1
Parametrize findthreshold
#268
ggabernet
closed
1 year ago
1
Dev
#267
ssnn-airr
closed
1 year ago
2
Add assembled check to samplesheet, fix report use read_rearrangement
#266
ggabernet
closed
1 year ago
2
Apply review corrections and tool version update
#265
ggabernet
closed
1 year ago
2
Add public_aws_ecr profile
#264
adamrtalbot
closed
1 year ago
2
bump versions to 3.1.0
#263
ggabernet
closed
1 year ago
1
3.1.0 release: Template update and minor bugfixes
#262
ggabernet
closed
1 year ago
2
Changeo Assigngenes format airr
#261
ggabernet
closed
1 year ago
1
Update immcantation-devel changes
#260
ggabernet
closed
1 year ago
2
Immcantation devel
#259
ggabernet
closed
1 year ago
1
Report fix and other bugfixes
#258
ggabernet
closed
1 year ago
1
Identify / remove spaces in fields in the metadata table
#257
ggabernet
closed
1 year ago
1
Template update nf-core tools v2.8
#256
ggabernet
closed
1 year ago
1
Important! Template update for nf-core/tools v2.8
#255
nf-core-bot
closed
1 year ago
0
dowser updates
#254
ssnn-airr
closed
1 year ago
1
Test data
#253
ggabernet
opened
1 year ago
0
Make sure all immcantation references are cited (esp. new tools)
#252
ggabernet
closed
1 year ago
1
Define clones with dowser
#251
ggabernet
closed
1 year ago
1
Back to dev
#250
ggabernet
closed
1 year ago
1
ci container do not run on master
#249
ggabernet
closed
1 year ago
1
Apply review comments
#248
ggabernet
closed
1 year ago
2
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