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nf-core
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airrflow
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
https://nf-co.re/airrflow
MIT License
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update aws paths
#247
FriederikeHanssen
closed
1 year ago
1
Add remaining R scripts to EnchantR
#246
ggabernet
opened
1 year ago
0
Add missing module versions
#245
ggabernet
closed
1 year ago
1
Bump version 3.0
#244
ggabernet
closed
1 year ago
1
Revert AWS test SRA bucket
#243
ggabernet
closed
1 year ago
1
Revert workaround for Slurm Sbatch file too large when possible
#242
ssnn-airr
closed
1 year ago
1
Filter out sequences with NA in v_call, d_call and j_call
#241
ggabernet
closed
1 year ago
1
add full tests sra bucket paths
#240
ggabernet
closed
1 year ago
3
more changes for slurm size limit
#239
ssnn-airr
closed
1 year ago
1
Release 3.0
#238
ggabernet
closed
1 year ago
3
Update to EnchantR 0.1.1
#237
ggabernet
closed
1 year ago
1
Update EnchantR build
#236
ggabernet
closed
1 year ago
1
Fix Airrflow report
#235
ggabernet
closed
1 year ago
1
update enchantr
#234
ggabernet
closed
1 year ago
1
Dev
#233
ssnn-airr
closed
1 year ago
1
Clone tables after `define clone` process only contain `IGH` - `TRB` clones
#232
ggabernet
opened
1 year ago
0
try fix error problem pandoc
#231
ggabernet
closed
1 year ago
2
Add metada should add only metadata columns needed for the analyses
#230
ssnn-airr
opened
1 year ago
0
renamed enchantr argument
#229
ssnn-airr
closed
1 year ago
1
Improve docs
#228
ggabernet
closed
1 year ago
2
Update to `enchantR` 0.1.1
#227
ggabernet
closed
1 year ago
2
added crossby
#226
ssnn-airr
closed
1 year ago
1
add plotly interactive report
#225
ggabernet
closed
1 year ago
2
Template update v2.7.2
#224
ggabernet
closed
1 year ago
1
Singularity bugfix: keep report log file list in local workdir
#223
dladd
closed
1 year ago
1
Update docs and containers
#222
ggabernet
closed
1 year ago
1
issue #220 and docs
#221
ssnn-airr
closed
1 year ago
3
Add info on README.md
#220
ggabernet
closed
1 year ago
0
Update enchantr to 0.0.6
#219
ggabernet
closed
1 year ago
2
Airrflow
#218
ssnn-airr
closed
1 year ago
1
Important! Template update for nf-core/tools v2.7.2
#217
nf-core-bot
closed
1 year ago
0
Airrflow
#216
ssnn-airr
closed
1 year ago
1
Template update for nf-core/tools version 2.7.1
#215
ggabernet
closed
1 year ago
1
Important! Template update for nf-core/tools v2.7.1
#214
nf-core-bot
closed
1 year ago
1
Merge template update
#213
ggabernet
closed
1 year ago
1
Bump versions for 2.4.0 release
#212
ggabernet
closed
1 year ago
2
PR for release 2.4.0
#211
ggabernet
closed
1 year ago
2
add fastp
#210
ggabernet
closed
1 year ago
1
Merge template updates nf-core v2.6
#209
ggabernet
closed
1 year ago
1
Update to enchantr version 0.0.5
#208
ggabernet
closed
1 year ago
1
Airrflow
#207
ssnn-airr
closed
1 year ago
2
Fix input file bug
#206
ggabernet
closed
1 year ago
0
New changes towards Enchantr 0.0.5
#205
ggabernet
closed
1 year ago
2
Check where `subject_id` is converted to `null`
#204
ggabernet
closed
1 year ago
1
Enchantr report outputs
#203
ggabernet
closed
1 year ago
0
Add assembled samplesheet usage docs
#202
ggabernet
closed
1 year ago
0
Fastq samplesheet auto single_cell FALSE
#201
ggabernet
closed
8 months ago
1
Use `enchantr` validate input also for `Fastq` samplesheet
#200
ggabernet
closed
8 months ago
1
scqc outs multiple dbs, update modules and paths
#199
ssnn-airr
closed
1 year ago
1
Dowser lineages `igphyml` when using `r-enchantr=0.0.3`
#198
ggabernet
closed
1 year ago
9
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