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nf-core / atacseq

ATAC-seq peak-calling and QC analysis pipeline
https://nf-co.re/atacseq
MIT License
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Improve website on parameters section Alignment Options for argument --save_unaligned #359

Closed aghr closed 4 months ago

aghr commented 7 months ago

Description of feature

The description of parameter --save_unaligned reads: "Where possible, save unaligned reads from either STAR, HISAT2 or Salmon to the results directory." but if I got it right then does the pipeline offer mappers BWA, Bowtie2, and STAR, but not HISAT2 nor Salmon.

JoseEspinosa commented 4 months ago

Thanks for reporting @aghr, this is now fixed on the dev branch. Done in #368