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nf-core
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methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
https://nf-co.re/methylseq
MIT License
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Add bwameth test config
#364
scoughlan2
closed
8 months ago
3
Correct documentation to explain minimal inputs for bwa-meth subworkflow
#363
scoughlan2
closed
7 months ago
4
No groups
#362
edmundmiller
closed
8 months ago
2
Missing type field in nextflow_schema.json file
#361
scoughlan2
opened
9 months ago
0
ERROR ~ fromIndex = -1
#360
Adrian-Zet
closed
8 months ago
6
Fix expansion of ignore_r1 parameters in modules.config
#359
noecochetel
closed
10 months ago
3
Parameters ignore_r1 for methylationextractor not expanded
#358
noecochetel
closed
10 months ago
0
Copy methylKit-compatible files to publishDir
#357
ltosti-tagomics
closed
10 months ago
1
post-release dev bump version and snapshots
#356
sateeshperi
closed
10 months ago
1
fix for bug #354
#355
ltosti-tagomics
closed
10 months ago
1
methylKit-compatible files are not copied to publishDir
#354
ltosti-tagomics
closed
10 months ago
0
Error when providing a bwameth index (MethylSeq v2.4.0 and v2.5.0)
#353
bioinfoMMS
opened
10 months ago
1
bwameth index creation fails
#352
FutureFellwalker
opened
10 months ago
8
Pipeline unable to recognise samples processed across multiple lanes
#351
jma1991
opened
10 months ago
2
Add scatter CI
#350
edmundmiller
closed
8 months ago
2
pipeline improvements
#349
AugustDev
closed
10 months ago
1
Release Prep for 2.5.0
#348
edmundmiller
closed
10 months ago
1
Dev -> Master 2.5.0
#347
edmundmiller
closed
10 months ago
1
Citationtools
#346
edmundmiller
closed
10 months ago
1
Maintainers
#345
edmundmiller
closed
10 months ago
2
Important! Template update for nf-core/tools v2.10
#344
nf-core-bot
closed
10 months ago
1
Support pipeline-specific configs
#343
maxulysse
closed
11 months ago
1
Add exists to Schema
#342
edmundmiller
closed
10 months ago
2
Use fromSamplesheet
#341
edmundmiller
closed
1 year ago
1
nf-validation
#339
edmundmiller
closed
10 months ago
0
Refactor kit processing to be maintainable
#338
edmundmiller
opened
1 year ago
0
Update toolCitationText
#336
edmundmiller
closed
10 months ago
1
Wrong display values for "zymo" and "em_seq" presets on help page
#335
wassimsalam01
closed
1 year ago
4
test failure
#334
achristofferson-bbi
opened
1 year ago
0
Apply easy module updates
#333
ewels
closed
1 year ago
3
methylseq is requesting very high compute resources I don't have.
#332
sahuno
closed
1 year ago
2
Publish coverage files
#331
FelixKrueger
closed
1 year ago
1
Leave spare memory for samtools sort (again)
#330
suhrig
closed
1 year ago
4
Important! Template update for nf-core/tools v2.9
#329
nf-core-bot
closed
1 year ago
1
`samtools sort` overwrites
#328
bounlu
opened
1 year ago
0
Add `--skip_fastqc` option
#327
bounlu
opened
1 year ago
0
bump version 2.5.0dev
#326
sateeshperi
closed
1 year ago
1
fix ignore params help text [ci skip]
#325
sateeshperi
closed
1 year ago
1
CI-update-skip-dev-condition, update README and changelog
#324
sateeshperi
closed
1 year ago
0
ci: Attempt to remove duplicate code
#323
edmundmiller
closed
1 year ago
0
2.4.0 code review fixes
#322
sateeshperi
closed
1 year ago
2
Dev -> Master 2.4.0
#321
sateeshperi
closed
1 year ago
0
bump version 2.4.0
#320
sateeshperi
closed
1 year ago
0
bump-version 2.4.0
#319
sateeshperi
closed
1 year ago
0
disable CI PR commenter
#318
sateeshperi
closed
1 year ago
3
removed unused directory
#317
njspix
closed
1 year ago
3
303-add-bamqc-regions-file-param
#316
sateeshperi
closed
1 year ago
4
Fix/maintenance fixes
#315
sateeshperi
closed
1 year ago
14
Update nextflow.config
#314
RogerHw
closed
1 year ago
0
Hs metrics
#313
RogerHw
opened
1 year ago
5
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