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nf-core
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phaseimpute
MIT License
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New development
#122
LouisLeNezet
opened
4 days ago
0
Check adherence to guidelines for pipeline release
#121
atrigila
opened
1 month ago
0
Add tests with dog data
#120
atrigila
closed
1 month ago
0
Improve tests in dog genome
#119
atrigila
closed
1 month ago
0
Explain customization in docs
#118
atrigila
closed
1 month ago
0
change output directory
#117
atrigila
opened
1 month ago
0
Add QUILT2
#116
atrigila
opened
1 month ago
0
include downsampleToCov
#115
atrigila
closed
1 month ago
0
change panel.csv
#114
atrigila
opened
1 month ago
0
Improve writing
#113
LouisLeNezet
opened
2 months ago
1
Contribute back to NF-Core
#112
LouisLeNezet
opened
2 months ago
0
Nf test for everyone !
#111
LouisLeNezet
closed
1 month ago
1
Update path to full sample
#110
LouisLeNezet
closed
2 months ago
0
Update sample sim full
#109
LouisLeNezet
closed
2 months ago
1
Impute vcf files / snp chip array
#108
LouisLeNezet
opened
2 months ago
0
Impute in batch or individually
#107
LouisLeNezet
opened
2 months ago
0
Use nft-vcf
#106
LouisLeNezet
closed
1 month ago
0
remove unused subworkflow
#105
atrigila
closed
2 months ago
0
Remove POSFILE_PREPARE_GAWK
#104
atrigila
closed
2 months ago
0
Update glimpse2_phase gunzip & multiqc
#103
LouisLeNezet
closed
2 months ago
0
Fix chr name errors
#102
LouisLeNezet
closed
2 months ago
2
Change compute_freq default to false
#101
LouisLeNezet
closed
2 months ago
0
Update all nf-core modules
#100
LouisLeNezet
closed
2 months ago
0
Support for both CRAM and BAM at the same time
#99
LouisLeNezet
opened
2 months ago
1
chr check does not work on dog datasets
#98
atrigila
closed
2 months ago
2
add dog config to test panelprep
#97
atrigila
closed
2 months ago
0
Simplify CSV export and posfile usage
#96
LouisLeNezet
closed
2 months ago
0
Panel chunking
#95
LouisLeNezet
opened
3 months ago
3
Fasta fai and doc
#94
LouisLeNezet
closed
2 months ago
0
Add support for CRAM, check contigs name
#93
LouisLeNezet
closed
2 months ago
0
Fix typo in nextflow_schema.json
#92
maxulysse
closed
3 months ago
0
Update metro map
#91
LouisLeNezet
closed
3 months ago
0
Future improvement
#90
LouisLeNezet
closed
2 months ago
0
Update all nf-core tools
#89
LouisLeNezet
closed
2 months ago
0
Multiqc
#88
LouisLeNezet
closed
3 months ago
1
test profile does not run quilt
#87
matthdsm
closed
3 months ago
1
Bcftools convert to vcf_sites_extract_bcftools
#86
atrigila
closed
3 months ago
0
Use external params for testing
#85
atrigila
closed
3 months ago
0
Make BAM_REGION optional
#84
LouisLeNezet
closed
3 months ago
0
Add a small test dataset with another species
#83
atrigila
closed
2 months ago
0
MULTIQC report per sample
#82
atrigila
closed
3 months ago
0
Make split the bam into the region specified optional
#81
atrigila
closed
3 months ago
0
Move BCFTOOLS convert to vcf extract
#80
LouisLeNezet
closed
2 months ago
1
Improve documentation
#79
LouisLeNezet
closed
3 months ago
0
Validate
#78
LouisLeNezet
closed
4 months ago
0
design tests for each --step and --param
#77
atrigila
closed
3 months ago
0
Make validate step autonomous if sites given
#76
LouisLeNezet
closed
4 months ago
0
Fix phasing and add --freq
#75
LouisLeNezet
closed
4 months ago
1
Add external posfile
#74
atrigila
closed
4 months ago
1
Handle --posfile param for --step impute (all tools)
#73
atrigila
closed
4 months ago
0
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