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nf-core
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rnavar
gatk4 RNA variant calling pipeline
https://nf-co.re/rnavar
MIT License
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incorrect merging (CAT_FASTQ) of different samples
#54
ojziff
closed
2 years ago
3
Prepare release 1.0.0
#53
praveenraj2018
closed
2 years ago
8
Bump version to 1.0.0; Edit CHANGELOG.md
#52
praveenraj2018
closed
2 years ago
1
Minor corrections in documentation
#51
praveenraj2018
closed
2 years ago
1
produce g.vcf file
#50
SarahMaman
opened
2 years ago
2
Latest GATK version
#49
praveenraj2018
closed
2 years ago
1
Important! Template update for nf-core/tools v2.4
#48
nf-core-bot
closed
2 years ago
0
Review feedback corrections
#47
praveenraj2018
closed
2 years ago
1
Additional review comments addressed
#46
praveenraj2018
closed
2 years ago
1
Review corrections
#45
praveenraj2018
closed
2 years ago
1
Simplified splitNCigar subworkflow with bam_csi_index fix
#44
praveenraj2018
closed
2 years ago
2
CSI index support and other minor fixes
#43
praveenraj2018
closed
2 years ago
3
samplesheet check for distributed run
#42
AnotherSimon
closed
2 years ago
5
Allow bam files to be added as input to rnavar workflow
#41
jaybee84
opened
2 years ago
6
Exonic bed other fixes
#40
praveenraj2018
closed
2 years ago
3
PSEUDO PR - DO NOT MERGE
#39
maxulysse
closed
2 years ago
12
Issue fix and minor additions
#38
praveenraj2018
closed
2 years ago
1
Fix: Call genome index if star_index is not provided
#37
praveenraj2018
closed
2 years ago
1
fix: renamed meta with interval BaseName to work correctly in MergeVCFs
#36
praveenraj2018
closed
2 years ago
1
Doc final updates
#35
praveenraj2018
closed
2 years ago
1
Somatic Variant Calling (Tumor-Normal & Tumor-Only)
#34
JasperO98
closed
2 years ago
1
Dsl2 updates
#33
praveenraj2018
closed
2 years ago
1
nf-core template merge 2.3.2
#32
praveenraj2018
closed
2 years ago
1
nf-core template merge 2.3.2
#31
praveenraj2018
closed
2 years ago
1
Nf core template merge 2.3.2
#30
praveenraj2018
closed
2 years ago
1
Important! Template update for nf-core/tools v2.3.2
#29
nf-core-bot
closed
2 years ago
0
Dsl update2
#28
praveenraj2018
closed
2 years ago
7
Important! Template update for nf-core/tools v2.3
#27
nf-core-bot
closed
2 years ago
0
Cannot overwrite some params
#26
m3hdad
opened
2 years ago
0
grep feature name for BED interval list
#25
m3hdad
closed
2 years ago
2
GffGtf fix
#24
m3hdad
closed
2 years ago
1
added: skip_baserecalibration
#23
praveenraj2018
closed
2 years ago
1
Updated documentation
#22
praveenraj2018
closed
2 years ago
1
GFF to GTF conversion is ignored, GTF is required!
#21
m3hdad
closed
2 years ago
2
SIFT missense predictions for genomes
#20
m3hdad
opened
2 years ago
0
snp/indel databases are required
#19
m3hdad
closed
2 years ago
0
snp/indel databases are required [issue 001]
#18
m3hdad
closed
2 years ago
1
Fix: samtools faidx issue with genome.fa
#17
praveenraj2018
closed
2 years ago
1
DSL2 version
#16
praveenraj2018
closed
2 years ago
1
Important! Template update for nf-core/tools v2.2
#15
nf-core-bot
closed
2 years ago
0
Added rnavar custom config profile
#14
praveenraj2018
closed
2 years ago
1
Docs other fixes
#13
praveenraj2018
closed
2 years ago
5
Updates: Added custom index version check, --vcf option in VEP, GATK parameters and minor changes
#12
praveenraj2018
closed
2 years ago
2
fix: cache variable
#11
praveenraj2018
closed
2 years ago
1
Parallel proc
#10
praveenraj2018
closed
2 years ago
1
Added variant annotation subworkflow with snpeff and VEP
#9
praveenraj2018
closed
2 years ago
3
Updated with issue fixes, code cleanup and other improvements
#8
praveenraj2018
closed
2 years ago
3
Dev merge template tools 2.0.1
#7
maxulysse
closed
3 years ago
10
Important! Template update for nf-core/tools v2.1
#6
nf-core-bot
closed
3 years ago
1
Important! Template update for nf-core/tools v2.0.1
#5
nf-core-bot
closed
3 years ago
1
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