issues
search
nf-core
/
tools
Python package with helper tools for the nf-core community.
https://nf-co.re
MIT License
232
stars
187
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
lint fails missing variables that are present
#3075
mandysulli
closed
2 months ago
6
Fix number of arguments for pipelines_create within the command_create function
#3074
LaurenceKuhl
closed
2 months ago
0
Fix 3068
#3073
LaurenceKuhl
closed
2 months ago
1
Remove release announcement for non nf-core pipelines
#3072
LaurenceKuhl
closed
2 months ago
0
Update python:3.12-slim Docker digest to f11725a
#3071
renovate[bot]
closed
2 months ago
0
Restructure pipeline tests and move pipeline linting into subfolder
#3070
mashehu
closed
1 month ago
0
No nf-core modules found
#3069
mandysulli
closed
2 months ago
8
nf-core create fails on 2.14.2.dev0
#3068
SPPearce
closed
2 months ago
1
Allow numbers in pipeline names
#3067
adamrtalbot
opened
2 months ago
3
Use resource limits instead of setting process directives in nf-test configuration
#3066
adamrtalbot
opened
2 months ago
0
Lint for pipeline nf-test contents
#3065
adamrtalbot
opened
2 months ago
0
Lint for tests/nextflow.config contents
#3064
adamrtalbot
opened
2 months ago
0
Lint contents of nf-test.config
#3063
adamrtalbot
opened
2 months ago
0
Remove Azure specific documentation which is no longer required
#3062
adamrtalbot
closed
2 months ago
0
handle new jsonschema error type
#3061
mashehu
closed
2 months ago
0
Update dependency textual to v0.72.0
#3060
renovate[bot]
closed
2 months ago
0
Update pre-commit hook astral-sh/ruff-pre-commit to v0.5.4
#3059
renovate[bot]
closed
1 month ago
2
Update to pytest v8 and move it to dev dependencies
#3058
mashehu
closed
2 months ago
0
Lint unused import
#3057
LouisLeNezet
opened
2 months ago
0
modules test on a private modules server requires --git-remote
#3056
SPPearce
opened
2 months ago
0
template: Use filename in code block for `params.yml`
#3055
mashehu
closed
2 months ago
0
update api docs to new structure
#3054
mashehu
closed
2 months ago
0
Action Required: Fix Renovate Configuration
#3053
renovate[bot]
closed
2 months ago
0
Update pre-commit hook astral-sh/ruff-pre-commit to v0.5.1
#3052
renovate[bot]
closed
2 months ago
0
update output_dir for api docs to new website structure
#3051
mashehu
closed
2 months ago
0
Update python:3.12-slim Docker digest to d5f1674
#3050
renovate[bot]
closed
2 months ago
0
linting for nf-test snapshot
#3049
maxulysse
opened
2 months ago
1
Update gitpod/workspace-base Docker digest to 0f38224
#3048
renovate[bot]
closed
2 months ago
1
add flagg limit_output for modules update
#3047
Joon-Klaps
closed
2 months ago
4
Remove deprecated syntax
#3046
maxulysse
closed
2 months ago
4
Add flag to limit diff output of modules update
#3045
Joon-Klaps
closed
1 month ago
0
Subworkflow install failure still results in a 0 exit code
#3044
jvfe
opened
2 months ago
2
Non-CLI usage of nf-core download
#3043
seedgeorge
opened
2 months ago
1
Template: Run awsfulltest on PRs to `master` with two PR approvals
#3042
mashehu
closed
2 months ago
1
Update python:3.12-slim Docker digest to da2d7af
#3041
renovate[bot]
closed
2 months ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.5.0
#3040
renovate[bot]
closed
2 months ago
1
move pipeline commands to functions to avoid duplication
#3039
mirpedrol
closed
2 months ago
0
Create app: display input textbox with equally spaced grid
#3038
mirpedrol
closed
2 months ago
0
Replace check_max function with resourceLimits directive
#3037
jfy133
opened
2 months ago
5
Add warning deprecation message to top-level commands
#3036
mirpedrol
closed
2 months ago
0
Revert "move pipeline subcommands for v3.0"
#3035
mirpedrol
closed
2 months ago
1
Download CI erroring since is using development version of tools
#3034
JoseEspinosa
closed
1 month ago
1
Update pre-commit hook pre-commit/mirrors-mypy to v1.10.1
#3033
renovate[bot]
closed
2 months ago
1
Modules meta.yml ontology
#3032
mirpedrol
opened
3 months ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.4.10
#3031
renovate[bot]
closed
3 months ago
0
`nf-core schema build` uses old schema in json file
#3030
SimonDMurray
closed
3 months ago
2
Linting: Remove 'defaults' from conda environment.yml file.
#3029
ewels
closed
3 weeks ago
2
Module meta.yml restructure
#3028
mirpedrol
closed
1 day ago
3
CLI helper to select EDAM ontologies for module inputs / outputs
#3027
ewels
opened
3 months ago
0
Fetch bio.tools identifiers for module YAML file
#3026
ewels
opened
3 months ago
0
Previous
Next