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nf-core
/
tools
Python package with helper tools for the nf-core community.
https://nf-co.re
MIT License
241
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189
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Update gitpod.Dockerfile
#3164
sateeshperi
closed
1 month ago
1
Container cache download
#3163
muffato
opened
1 month ago
2
Singularity container symlinks not consistently created
#3162
muffato
opened
1 month ago
0
Don't test conda `environment.yml` `name` attribute
#3161
ewels
closed
1 month ago
2
error_retry label not recognized as standard label for certain module structures
#3160
Felix-Kummer
opened
1 month ago
2
Add --update-all flag to conda in Gitpod
#3159
mahesh-panchal
closed
1 month ago
1
nf-core pipelines bump-version command should update pipeline version in nf-test snapshots
#3158
maxulysse
opened
1 month ago
0
`modules update` with `patch` deletes files in `templates`
#3157
FriederikeHanssen
opened
1 month ago
1
Fix issue where tool and subtool have the same name
#3156
nvnieuwk
closed
1 month ago
1
Update pre-commit hook editorconfig-checker/editorconfig-checker.python to v3
#3155
renovate[bot]
closed
4 weeks ago
1
Update dependency pytest-textual-snapshot to v1
#3154
renovate[bot]
closed
1 month ago
3
chore(deps): update dependency textual-dev to v1.6.1
#3153
renovate[bot]
closed
3 weeks ago
2
Update dependency textual to v0.85.1
#3152
renovate[bot]
opened
1 month ago
0
Update pre-commit hook pre-commit/mirrors-mypy to v1.11.2
#3151
renovate[bot]
closed
4 weeks ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.6.9
#3150
renovate[bot]
closed
3 weeks ago
1
Template: test pipeline with conda and singularity on PRs to master
#3149
mirpedrol
closed
4 weeks ago
1
run `nf-core lint --release` on PRs to master
#3148
mirpedrol
closed
1 month ago
0
Linting: handle cases where the directory path contains the name of the component
#3147
mirpedrol
closed
2 months ago
0
what is 'getGenomeAttribute' and how can we use igenomes without it?
#3146
stevekm
closed
2 months ago
10
Schema: Support multi-line text inputs
#3145
ewels
opened
2 months ago
1
Release PR (dev to master) does not fail with a pipeline still on dev version
#3144
maxulysse
closed
1 month ago
0
fix syncing a pipeline from current directory
#3143
mirpedrol
closed
2 months ago
0
Allow `main` as default channel
#3142
mashehu
opened
2 months ago
1
Create pre-commit hooks
#3141
edmundmiller
opened
2 months ago
2
Pass a list of modules/subworkflows(files) to nf-core modules lint
#3140
edmundmiller
opened
2 months ago
0
Adopt pyproject.toml
#3139
edmundmiller
opened
2 months ago
2
Automating pytest migration
#3138
GallVp
opened
2 months ago
0
organise changelog and bump version to 3.0.0dev
#3137
mirpedrol
closed
2 months ago
0
Update gitpod
#3136
mahesh-panchal
closed
2 months ago
0
Add a linting test for the metro map
#3135
maxulysse
opened
2 months ago
0
Template: add option to exclude tower.yml from pipeline template
#3134
mirpedrol
closed
2 months ago
1
Template: add option to exclude test configs from pipeline template
#3133
mirpedrol
closed
2 months ago
0
Remove try-catch blocks around institutional configs
#3132
bentsherman
closed
1 month ago
14
Move igenomes config into pipeline code
#3131
bentsherman
closed
1 month ago
4
Template: add option to exclude documentation from pipeline template
#3130
mirpedrol
closed
2 months ago
5
Template: add option to exclude fastqc from pipeline template
#3129
mirpedrol
closed
2 months ago
0
Template: add option to exclude nf-core components from pipeline template
#3128
mirpedrol
closed
2 months ago
0
Template: add option to exclude adaptivecard and slackreport from pipeline template
#3127
mirpedrol
closed
2 months ago
0
Template: add option to exclude email from pipeline template
#3126
mirpedrol
closed
2 months ago
0
Template: add option to exclude license from pipeline template
#3125
mirpedrol
closed
2 months ago
0
Update python:3.12-slim Docker digest to 59c7332
#3124
renovate[bot]
closed
2 months ago
2
Add `-w`, `--fail-warned` option to `nf-core schema lint`
#3123
theJasonFan
opened
2 months ago
0
Update pre-commit hook astral-sh/ruff-pre-commit to v0.6.0
#3122
renovate[bot]
closed
2 months ago
0
chore(deps): update dependency prompt_toolkit to <=3.0.48
#3121
renovate[bot]
closed
1 week ago
1
Add a verbose option for nf-core modules test
#3120
LaurenceKuhl
closed
2 months ago
0
Moved the verbose for nf-core modules test
#3119
LaurenceKuhl
closed
2 months ago
0
Move the verbose for nf-core modules test
#3118
LaurenceKuhl
closed
2 months ago
1
Schema: rewrite to run local only and handle newer schema versions
#3117
mashehu
opened
2 months ago
1
nf-schema support
#3116
nvnieuwk
closed
2 months ago
5
Components: allow spaces at the betinning of include statements
#3115
mirpedrol
closed
2 months ago
0
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