nf-core tools issues - Githubissues

nf-core / tools

Python package with helper tools for the nf-core community.

https://nf-co.re

MIT License

241 stars 189 forks source link

issues

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Components: allow spaces at the betinning of include statements

#3115 mirpedrol closed 2 months ago
0
Lint for test data paths and produce a warning/error if the config map is used?

#3114 GallVp opened 2 months ago
0
GHA using the template features yaml file was not working as expected [skip changelog]

#3113 mirpedrol closed 2 months ago
0
add templatefeatures.yml to python package

#3112 mirpedrol closed 2 months ago
0
nf-core/tools download error

#3111 apeltzer closed 2 months ago
5
MultiQC results not cacheable

#3110 apeltzer opened 2 months ago
0
`nf-core sync` does not respect existing template config on dev branch

#3109 awgymer opened 2 months ago
0
Template: handle template features with a yaml file

#3108 mirpedrol closed 2 months ago
0
modules linting: Check that version.yml has version of all items in `environment.yml`

#3107 mashehu opened 2 months ago
0
Print test directory path in output from `nf-core test`

#3106 erikrikarddaniel opened 2 months ago
0
Template: add option to exclude codespaces from pipeline template

#3105 mirpedrol closed 2 months ago
0
Template: add option to exclude changelog from custom pipeline template

#3104 mirpedrol closed 2 months ago
0
Template: add option to exclude multiqc from pipeline template

#3103 mirpedrol closed 2 months ago
1
Add bot action to update textual snapshots and write bot documentation

#3102 mirpedrol closed 2 months ago
0
Template: add option to exclude citations for custom pipeline template

#3101 mirpedrol closed 2 months ago
2
Template: add option to exclude gitpod for custom pipeline template

#3100 mirpedrol closed 2 months ago
0
Template: Add tests to ensure all files are part of a template customisation group and all groups are tested

#3099 mirpedrol closed 1 month ago
0
Test pipelines with Singularity & Conda

#3098 mirpedrol closed 3 weeks ago
2
`xx` is present as an output in meta.yml but not in main.nf

#3097 GallVp closed 2 months ago
1
Components: Modules: allow multiline module input tuple

#3096 mirpedrol closed 2 months ago
0
Components: Modules : allow module lables between double quotes

#3095 mirpedrol closed 2 months ago
0
Pipelines: allow numbers in custom pipeline name

#3094 mirpedrol closed 2 months ago
0
Support version topic channels

#3093 edmundmiller opened 2 months ago
0
Update dependency textual to v0.76.0

#3092 renovate[bot] closed 2 months ago
1
Update pre-commit hook pre-commit/mirrors-mypy to v1.11.1

#3091 renovate[bot] closed 3 months ago
0
Update pre-commit hook astral-sh/ruff-pre-commit to v0.5.5

#3090 renovate[bot] closed 2 months ago
2
Linting throws an error if hyphens appear in the name

#3089 adamrtalbot closed 2 months ago
5
Manual include or exclude specific files in template

#3088 adamrtalbot opened 3 months ago
0
Fix module linting warning for process_high_memory

#3087 GallVp closed 3 months ago
0
Add process_high_memory to create/lint list

#3086 GallVp closed 3 months ago
1
Add `--migrate_pytest` option to `nf-core test` command

#3085 mashehu closed 2 months ago
0
Template: add option to exclude code linters for custom pipeline template

#3084 mirpedrol closed 2 months ago
0
feat: Install subworkflows with modules from different remotes

#3083 jvfe opened 3 months ago
6
Move --migrate-pytest command to `module test` command group

#3082 FriederikeHanssen closed 1 month ago
3
fix the nested list bug that makes email not be delivered

#3081 HaidYi opened 3 months ago
11
Fail to send the completion email

#3080 HaidYi opened 3 months ago
0
Update python:3.12-slim Docker digest to 740d94a

#3079 renovate[bot] closed 3 months ago
0
Update gitpod/workspace-base Docker digest to f189a41

#3078 renovate[bot] closed 3 months ago
0
Add option `--fix` to update the `meta.yml` file of subworkflows.

#3077 mirpedrol closed 1 month ago
1
Update pre-commit hook pre-commit/mirrors-mypy to v1.11.0

#3076 renovate[bot] closed 3 months ago
0
lint fails missing variables that are present

#3075 mandysulli closed 3 months ago
6
Fix number of arguments for pipelines_create within the command_create function

#3074 LaurenceKuhl closed 3 months ago
0
Fix 3068

#3073 LaurenceKuhl closed 3 months ago
1
Remove release announcement for non nf-core pipelines

#3072 LaurenceKuhl closed 3 months ago
0
Update python:3.12-slim Docker digest to f11725a

#3071 renovate[bot] closed 3 months ago
0
Restructure pipeline tests and move pipeline linting into subfolder

#3070 mashehu closed 2 months ago
0
No nf-core modules found

#3069 mandysulli closed 3 months ago
8
nf-core create fails on 2.14.2.dev0

#3068 SPPearce closed 3 months ago
1
Allow numbers in pipeline names

#3067 adamrtalbot opened 3 months ago
3
Use resource limits instead of setting process directives in nf-test configuration

#3066 adamrtalbot opened 3 months ago
0

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