issues
search
nf-core
/
variantbenchmarking
A nextflow variant benchmarking pipeline - premature
https://nf-co.re/variantbenchmarking
MIT License
12
stars
7
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
57 fix prepy + rtgtools eval comb
#63
kubranarci
closed
4 months ago
0
design metro-map
#62
kubranarci
closed
3 months ago
0
svync input channel is fixed
#61
kubranarci
closed
4 months ago
0
58 test variant extractor for svs
#60
kubranarci
closed
4 months ago
0
wittyer bug
#59
kubranarci
opened
4 months ago
1
test variant-extractor for SVs
#58
kubranarci
closed
4 months ago
0
fix prepy + rtgtools eval comb
#57
kubranarci
closed
4 months ago
0
rtgtools fix
#56
kubranarci
closed
5 months ago
0
Use datavzrd to render interactive reports
#55
famosab
closed
4 weeks ago
1
rtgtools format takes forever
#54
kubranarci
closed
5 months ago
0
plot script fixed
#53
kubranarci
closed
5 months ago
0
Use datavzrd to create reports that are usable with NCBench
#52
famosab
closed
1 month ago
1
wittyer fixed
#51
kubranarci
closed
5 months ago
0
fix wittyer
#50
kubranarci
closed
5 months ago
1
fix caused by prepy
#49
kubranarci
closed
5 months ago
1
fix workflow prepy
#48
kubranarci
closed
5 months ago
0
16 add survivor merge
#47
kubranarci
closed
5 months ago
2
add SV benchmarking for somatic
#46
kubranarci
closed
4 months ago
1
plot.r fix
#45
kubranarci
closed
5 months ago
0
add aws full test
#44
kubranarci
closed
4 months ago
0
41 somatic benchmarking
#43
kubranarci
closed
6 months ago
0
generate truth.config
#42
kubranarci
closed
4 months ago
0
somatic benchmarking
#41
kubranarci
closed
6 months ago
0
35 add a script to merge benchmarking results
#40
kubranarci
closed
6 months ago
0
Nf core template merge 2.14.2
#39
maxulysse
closed
6 months ago
0
Important! Template update for nf-core/tools v2.14.1
#38
maxulysse
closed
6 months ago
0
Important! Template update for nf-core/tools v2.14.1
#37
nf-core-bot
closed
6 months ago
5
Important! Template update for nf-core/tools v2.14.0
#36
nf-core-bot
closed
6 months ago
1
add a script to merge benchmarking results
#35
kubranarci
closed
6 months ago
0
sv benchmark params are exposed
#34
kubranarci
closed
6 months ago
0
exposing benchmarking params
#33
kubranarci
closed
6 months ago
1
svync process is not running through
#32
kubranarci
closed
4 months ago
0
add test case hg38 for nf-cmgg-structural
#31
kubranarci
opened
7 months ago
0
sv + small analysis implemented
#30
kubranarci
closed
7 months ago
1
update to nf-schema@2.0.0
#29
kubranarci
closed
1 month ago
0
add plot functions
#28
kubranarci
closed
6 months ago
0
split variant benchmarking by type
#27
kubranarci
closed
5 months ago
0
18 standardization vcf filtering
#26
kubranarci
closed
7 months ago
0
add SQLite database
#25
kubranarci
closed
5 months ago
0
wittyer added
#24
kubranarci
closed
8 months ago
0
subworkflows added
#23
kubranarci
closed
8 months ago
0
add vcf_preprocessing_deduplication subworkflow
#22
kubranarci
closed
8 months ago
0
Dragen report nonstandard variants
#21
kubranarci
closed
8 months ago
0
Update svync config handling
#20
nvnieuwk
closed
8 months ago
2
Small variant benchmark part init
#19
kubranarci
closed
8 months ago
0
standardization VCF filtering
#18
kubranarci
closed
7 months ago
5
Fix lint
#17
kubranarci
closed
8 months ago
0
add SURVIVOR merge
#16
kubranarci
closed
5 months ago
2
vcfstats module
#15
kubranarci
closed
8 months ago
1
add config for svaba
#14
kubranarci
closed
4 months ago
0
Previous
Next