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nf-osi / kairos

kairos: NF Analysis Explorer
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new module idea: Power Analysis #33

Open jaybee84 opened 4 years ago

jaybee84 commented 4 years ago

Predict how many samples you need for your next RNA seq experiment using available data for estimation of variance in genes for different tumortypes

User controls 1. gene, 2. tumorType, 3. isCellLine, 4. assay(bulk/sc)

slider control: magnitude of change expected

output: variance in data, number of samples required (ideal, minimum)

allaway commented 4 years ago

Cool idea! I wonder why you're thinking about this right now... :)

jaybee84 commented 4 years ago

you got it!

allaway commented 3 years ago

Question: are there tools that do this already? this does not seem to be a disease-specific question/analysis, but I could be wrong.