nhoffman ya16sdb issues

nhoffman / ya16sdb

A curated subset of 16S rRNA sequences from NCBI

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issues

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review dependencies in venv vs singularity images

#27 nhoffman opened 5 years ago
1
create s3 bucket for data, automate upload of feather file

#26 nhoffman closed 5 years ago
2
use singularity image for ncbi tools

#25 nhoffman opened 5 years ago
0
Remove creation of dedicated stack and add deployment to existing dokku instance

#24 nhoffman opened 5 years ago
0
allow url-encoding of all selectors

#23 nhoffman closed 5 years ago
2
move axes to top of plot along with other selectors

#22 nhoffman opened 5 years ago
1
Add E faecalis, E faecium and E avium to the test data set feather file

#21 crosenth closed 5 years ago
1
Setup dash app LetsEncrypt plugin on Dokku

#20 crosenth closed 5 years ago
1
Split dash app legend into separate color and shape legends

#19 crosenth closed 2 years ago
0
Add select and deselect all markers (glyphs) option to dash app

#18 crosenth opened 5 years ago
0
Wrong source specified for trusted types blastdb

#17 dhoogest closed 6 years ago
2
view outliers app

#16 nhoffman closed 5 years ago
5
Handle RefSeqs derived from other RefSeqs

#15 crosenth closed 6 years ago
1
consider post-filtered 'type' sequences for target of vsearch

#14 dhoogest closed 6 years ago
7
non-species in dedup/1200bp/named/filtered

#13 nhoffman closed 6 years ago
3
seq_info.csv should be consistent among all subdirectories

#12 nhoffman closed 6 years ago
2
Add is_type column before dedup step

#11 crosenth closed 6 years ago
1
005 update bokeh plots

#10 nhoffman closed 6 years ago
2
do not trust list read in from filesystem location

#9 dhoogest closed 6 years ago
1
get tax db credentials from configuration file

#8 dhoogest closed 6 years ago
1
postgres credentials read from url.conf

#7 dhoogest closed 6 years ago
0
grab do-not-trust list from filesystem location defined as variable

#6 dhoogest closed 6 years ago
1
update bokeh plots

#5 nhoffman closed 6 years ago
3
Refseq parsing

#4 crosenth closed 6 years ago
0
implement "mini" pipeline for testing

#3 nhoffman closed 6 years ago
1
convert to python 3

#2 nhoffman closed 6 years ago
1
add sphinx docs

#1 nhoffman opened 7 years ago
2