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niaid
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image_portal_workflows
Workflows related to project previously referred to as "Hedwig"
BSD 3-Clause "New" or "Revised" License
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Add workflow api specs
#328
annshress
opened
1 year ago
1
killing off dead / commented out code - closes #302
#327
philipmac
closed
1 year ago
1
fix up mixed tabs / spaces
#326
philipmac
closed
1 year ago
1
Increase tiling size (for czi files) in bf2raw
#325
annshress
closed
1 year ago
1
Workflow run for .czi files is slow!
#324
annshress
closed
1 year ago
2
Refactor bf2raw command to be central/common function
#323
annshress
closed
1 year ago
1
required for registration script
#322
philipmac
closed
1 year ago
1
Create new SlurmCluster type
#321
philipmac
closed
11 months ago
2
Update configs for java and lrg_flow.convert
#320
annshress
closed
1 year ago
1
Prefect2 proto
#319
annshress
closed
1 year ago
0
Reference tasks incorrect in large_2d workflow
#318
philipmac
opened
1 year ago
0
ROI pipeline run failed in Dev - 9/15/2023
#317
NetaFG
closed
1 year ago
2
Common bioformats2raw command executor
#316
annshress
closed
1 year ago
1
Polish tests; Refactor and move tests
#315
annshress
closed
1 year ago
1
bumps pytools version - new SITK goodies - closes #312
#314
philipmac
closed
1 year ago
1
Fix/bump pytools tag
#313
philipmac
closed
1 year ago
1
set pytools to tag v3.0b01
#312
philipmac
closed
1 year ago
0
Addresses file share check, #309
#311
annshress
closed
1 year ago
1
Use workers count wherever bf2raw command is used
#310
annshress
closed
1 year ago
1
file_share in FileShareEnum
#309
philipmac
closed
1 year ago
0
`file_name` not being used in brt workflow
#308
philipmac
closed
1 year ago
0
fix spaces / tab issue in helper_scripts/hedwig_reg_listen.sh
#307
philipmac
closed
1 year ago
2
Register new czi workflow
#306
annshress
closed
1 year ago
1
add new czi workflow to registration
#305
philipmac
closed
1 year ago
0
Fix relative imports
#304
annshress
closed
1 year ago
1
change dot imports to fully qualified path
#303
philipmac
closed
1 year ago
0
purge old / commented out code
#302
philipmac
closed
1 year ago
0
2D pipeline in Dev is broken
#301
NetaFG
closed
1 year ago
2
Test callback structure
#300
annshress
closed
1 year ago
1
Adding new IF czi workflow
#299
philipmac
closed
1 year ago
0
Add coverage comment workflow action
#298
annshress
closed
1 year ago
1
Add file_share param into workflows
#297
annshress
closed
1 year ago
1
all refs to prod / qa / dev -ness of workflows should derive from init param
#296
philipmac
closed
1 year ago
0
Add new param `file_share` to workflows
#295
philipmac
closed
1 year ago
0
collate https://github.com/niaid/hedwig-comm-specs/issues/4 into a yaml spec
#294
philipmac
closed
10 months ago
1
Refactor large 2d flow
#293
annshress
closed
1 year ago
0
remove zarr_extract_2d and rechunk from lrg_2d_rgb/flow.py
#292
philipmac
closed
1 year ago
0
Replace strings by Asset type constants
#291
annshress
closed
1 year ago
2
Add pytest setup fixture to ensure .env file exists
#290
annshress
closed
1 year ago
1
create a *small* input to enable czi conversion tests be run in a reasonable length of time
#289
philipmac
closed
1 year ago
3
write a teardown for pytest
#288
philipmac
opened
1 year ago
2
remove binary / util paths from monkeypatching
#287
philipmac
closed
1 year ago
1
Add more unittests
#286
annshress
opened
1 year ago
1
set temp dir in config using python-dotenv
#285
philipmac
opened
1 year ago
0
Containers
#284
annshress
closed
1 year ago
0
init fileMetadata and imageMetadata callback elts as None
#283
philipmac
closed
1 year ago
0
Create S3 bucket to house test input files, and other binaries
#282
philipmac
closed
10 months ago
1
PR request template
#281
annshress
closed
1 year ago
0
Add Dockerfile for bioformats2raw
#280
annshress
closed
1 year ago
5
Refactor 2D pipeline code
#279
annshress
opened
1 year ago
1
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