Radiomics Analysis Portal sitkCore ++++++++++++++++++++++++++++++++++

The sitkCore package used by the Radiomics Analysis Portal (RAP) contains common utilities for developing image analysis algorithms that use data provided by the Tuberculosis Portals Program (TBPortals). The tools are written in Python and provided as an installable Python package. The application programming interface (API) is documented in Sphinx: https://niaid.github.io/rap_sitkCore

.. image:: https://github.com/niaid/rap_sitkCore/actions/workflows/main.yml/badge.svg?branch=master :target: https://github.com/niaid/rap_sitkCore/actions/workflows/main.yml :alt: Main Build Status

Installation

Dependencies are conventionally specified in pyproject.toml, and dependent packages are installed automatically by pip_. The package can be directly installed from the Github with the following command::

python -m pip install git+https://github.com/niaid/rap_sitkCore@v0.5.5

For pydicom to support more encodings additional pylibjpeg packages can be install. These dependencies are specified as extra requirements in the setup.py. Specifying the package a "rap_sitkcore[pylibjpeg]" will install the extra packages.

Github Releases ^^^^^^^^^^^^^^^

The Python module is also distributed as a wheel binary package. Wheels from the master branch can be manually downloaded from Github Actions in the "python-package" artifact.

Download the latest tagged release from the Github Releases_ page.

Contact

Please use the GitHub Issues_ for support.

Additionally, we can be emailed at: bioinformatics@niaid.nih.gov Please include "rap_sitCore" in the subject line.

.. _RAP: https://rap.tbportals.niaid.nih.gov/ .. _TBPortals: https://tbportals.niaid.nih.gov/ .. _SimpleITK toolkit: https://simpleitk.org .. _pip: https://pip.pypa.io/en/stable/quickstart/ .. _Github Actions: https://github.com/niaid/rap_sitkCore/actions?query=branch%3Amaster .. _GitHub Issues: https://github.com/niaid/rap_sitkCore .. _wheel: https://www.python.org/dev/peps/pep-0427/ .. _Github Releases: https://github.com/niaid/rap_sitkCore/release