issues
search
nick-youngblut
/
gtdb_to_taxdump
Convert GTDB taxonomy to NCBI taxdump format
MIT License
64
stars
13
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
ngsLCA: ngsLCA.cpp:60: void mod_db(int*, int*, int2int&, int2char&, int2char&): Assertion `parent.count(out[i])==1'
#24
itpcas-zcb
opened
3 weeks ago
1
KeyError: 'Cannot find GCA003697015.1 accession in names.dmp'
#23
bheimbu
opened
1 year ago
3
Remove the name of the genome from the results generated by gtdb_to_taxdump.py
#22
wqssf102
opened
1 year ago
1
KeyError: 'Cannot find "ncbi_taxonomy"'
#21
jiaojiaoguan
closed
1 year ago
3
ncbi-gtdb_map.py (GTDB => NCBI) results in all NAs
#20
Somebodyatthdoor
closed
1 year ago
4
Make filename conversion more robust
#19
maxibor
closed
2 years ago
0
Fix bug in `acc2gtdb_tax.py`
#18
Sidduppal
closed
2 years ago
3
KeyError with `acc2gtdb_tax.py`
#17
Sidduppal
closed
2 years ago
2
AttributeError: module 'gtdb_to_taxdump' has no attribute 'Dmp'
#16
Sidduppal
closed
2 years ago
9
Question about ncbi-gtdb_map.py
#15
andressamv
closed
1 year ago
3
lineage2taxid error (module 'gtdb_to_taxdump' has no attribute 'Dmp')
#14
emaxortiz
closed
1 year ago
2
Unclassified sequences TAXID
#13
maxibor
closed
1 year ago
3
Add sequence accession to TAXID conversion tool
#12
maxibor
closed
2 years ago
2
Sync version across modules
#11
maxibor
closed
2 years ago
1
Fixed import error and regex error
#10
dportik
closed
2 years ago
1
Error in ncbi-gtdb_map.py using NCBI taxids
#9
dportik
closed
2 years ago
4
Preserve IDs
#8
andrewjmc
closed
1 year ago
7
ncbi-gtdb_map.py fails on importing networkx.algorithms.lowest_common_ancestors
#7
kevinmyers
closed
3 years ago
2
how to install?
#6
gruningerrj
closed
3 years ago
1
KeyError: 'orig_name'
#5
Askarbek-orakov
closed
3 years ago
2
GTDB to NCBI mapping results in empty taxa
#4
Askarbek-orakov
closed
3 years ago
10
"gtdb_to_diamond.py" generates an empty "gtdb_all.faa.gz" file
#3
Jigyasa3
closed
3 years ago
3
Using different starting NCBI taxonomy gives different results
#2
Jigyasa3
closed
1 year ago
8
accelerate rank query
#1
shenwei356
closed
4 years ago
1