Explore scIBD online

This is the repository of scIBD.

• scIBD homepage.
• Manual, the manual is accessible in the scIBD website.

Run scIBD locally

To run scIBD locally, follow the bellow instructions:

1. Install R, Rstudio and shiny-server on local computer.

2. Download the source code and data from https://github.com/niehu-szbl/scIBD_website_code.git

   git clone https://github.com/niehu-szbl/scIBD_website_code.git

3. Run scIBD application in Rstudio or command line.

• Run scIBD application in Rstudio
  1. Open Rstudio
  2. Open scIBD_website_code
  3. Click 'Run App' to run scIBD

• Run scIBD application from shell command line

  1. Go to the source code, then run

     cd scIBD_website_code
     Rscript -e "shiny::runApp('./', launch.browser = F, host = getOption('shiny.host', '127.0.0.1'), port = 3839)"

  2. In browser, go to 127.0.0.1:3839 to access this application.

Note: These instructions are tested on Ubuntu 20.04.6 LTS.