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niemasd
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TreeSwift
TreeSwift: Fast tree module for Python 3
https://niema.net/TreeSwift
GNU General Public License v3.0
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Create Tree.get_node() function
#33
niemasd
closed
6 months ago
2
Node params relevant to branch lost in subtree after pruning because internal node is deleted
#32
pekarj
closed
7 months ago
5
Fixed infinite recursion when copying node object
#31
JSdoubleL
closed
11 months ago
1
node order in the preorder traversal
#30
shayesteh99
closed
1 year ago
1
Add write_tree_nexus function
#29
niemasd
closed
1 year ago
1
Travis CI expired
#28
niemasd
closed
1 year ago
1
Parsing Error - Unescaped Characters
#27
valevalorin
closed
1 year ago
6
Refactor code, make it more python and squeeze out small performance gains.
#26
Uzaaft
closed
1 year ago
5
Refactor code, make it more python and squeeze out small performance gains
#25
Uzaaft
closed
1 year ago
5
Rerooting error
#24
smirarab
closed
1 year ago
2
parsing nexus files with ancestral state reconstruction
#23
pekarj
closed
2 years ago
10
Parsing nexus file
#22
pekarj
closed
2 years ago
18
Preorder traversal order
#21
theosanderson
closed
2 years ago
5
.deroot() behavior
#20
balabanmetin
closed
1 year ago
5
Skip leaves with missing edge lengths in average branch length
#19
richardmansfield
closed
3 years ago
1
`contract_low_support` can contract leaf nodes
#18
RuneBlaze
closed
3 years ago
1
AttributeError: 'NoneType' object has no attribute 'edge_length'
#17
alffdtu
closed
3 years ago
1
Reading in mutations
#16
pekarj
closed
3 years ago
3
Changed deroot function
#15
ekmolloy
closed
4 years ago
2
tree.diameter() does not take single branch into consideration
#14
YaosenLin
closed
3 years ago
1
added default arg for bfs
#13
devanshuDesai
closed
4 years ago
1
traverse_rootdistorder(): unsupported operand type
#12
mahermassoud
closed
3 years ago
1
Nearest-neighbor leaf search
#11
mahermassoud
closed
3 years ago
0
Read tree from linkage matrix
#10
mahermassoud
closed
5 years ago
2
Failed reading nexus file
#9
pekarj
closed
5 years ago
3
Minor: unclosed files triggering ResourceWarnings
#8
bede
closed
6 years ago
5
Feature request: deroot
#7
bede
closed
6 years ago
3
Add ability to extract a subtree rooted at a given tree
#6
niemasd
closed
6 years ago
1
Add ability to ladderize trees
#5
niemasd
closed
6 years ago
3
Make recursive traversals iterative
#4
niemasd
closed
6 years ago
1
Add ability to write trees to file
#3
niemasd
closed
6 years ago
1
Add ability to reroot trees
#2
niemasd
closed
6 years ago
1
Add ability to load trees in different formats
#1
niemasd
closed
6 years ago
4