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niemasd / ViReflow

An elastically-scaling automated AWS pipeline for viral consensus sequence generation
GNU General Public License v3.0
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Add user-selectable choices for multiple tools #1

Closed niemasd closed 3 years ago

niemasd commented 3 years ago

For each step (e.g. read mapping, trimming, variant calling, etc.), implement multiple tools into ViReflow and allow the user to select (with our "best" choices being the defaults, much like how ViralMSA works)

niemasd commented 3 years ago

Added ability to select different variant calling tools in Version 1.0.0