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nikolaichik
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SigmoID
A Xojo/python tool for identification and annotation of transcription factor binding sites in bacterial genomes
GNU General Public License v3.0
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TypeError: SeqFeature.__init__() got an unexpected keyword argument 'strand'
#43
comingkms
opened
5 months ago
2
local search of binding sites in the GenomeWin browser
#42
p-vychik
closed
1 year ago
0
site analysis logs aren't written to the LogoWin, …
#41
p-vychik
closed
1 year ago
0
Profile analysis
#40
p-vychik
closed
1 year ago
0
fix for single page responses
#39
p-vychik
closed
2 years ago
0
Uniprot mapping
#38
p-vychik
closed
2 years ago
0
fixes for TF-classifier and DeNovo https connection
#37
p-vychik
closed
2 years ago
0
Use same uniprot id mapping in de novo run
#36
p-vychik
closed
2 years ago
0
ProfileWizard IDs processing in fasta description
#35
p-vychik
closed
2 years ago
0
fix for uniprot id mapping
#34
p-vychik
closed
2 years ago
0
logo export to sig file
#33
p-vychik
closed
2 years ago
0
RegulonDBWin fix for new db version, fasta headers check in profile w…
#32
p-vychik
closed
2 years ago
0
Incorrect selection in genome browser
#31
nikolaichik
opened
2 years ago
0
ORFs filtration by length for de-novo search
#30
p-vychik
closed
2 years ago
0
Browser tabs
#29
p-vychik
closed
2 years ago
0
tabs size fix
#28
p-vychik
closed
2 years ago
0
searchbar for WebBrowser
#27
p-vychik
closed
2 years ago
0
fixes for description tab
#26
p-vychik
closed
2 years ago
0
HmmScan report added
#25
p-vychik
closed
2 years ago
0
output window for 'List encoded TFs'
#24
p-vychik
closed
2 years ago
0
export information about encoded TFs in TSV format
#23
p-vychik
closed
2 years ago
0
Feature table export issue
#22
nikolaichik
opened
3 years ago
0
Single CHiPmunk motif conversion is needed
#21
nikolaichik
opened
4 years ago
0
Command line tool for adding promoter annotations to genbank?
#20
Buuntu
opened
5 years ago
9
eutils efetch returns incomlete results
#19
nikolaichik
opened
5 years ago
0
Error in motif search if genome isn't open
#18
nikolaichik
opened
5 years ago
0
included meme binary produces error "wrong template.eps location"
#17
p-vychik
closed
4 years ago
1
Genome fragment retrieval broken
#16
nikolaichik
closed
6 years ago
1
Incorrect handling of frameshifted ORFs
#15
nikolaichik
closed
6 years ago
1
HMMer searches @ EBI broken
#14
nikolaichik
closed
6 years ago
1
There was a problem in the following method: SeqRetrieval:GetRegSeq
#13
raman-nareika
closed
4 years ago
2
There was a problem in the following method: deNovoWin:RunButton
#12
raman-nareika
closed
7 years ago
6
bundled meme doesn't produce html output
#11
nikolaichik
closed
8 years ago
1
HmmGen ignores ncRNA genes
#10
nikolaichik
closed
9 years ago
2
TermGen: bidirectional terminators
#9
nikolaichik
closed
9 years ago
1
TermGen: remove terminator duplicates
#8
nikolaichik
closed
9 years ago
1
HmmGen interface: annotation improvement
#7
nikolaichik
closed
9 years ago
1
TermGen: annotation improvement
#6
nikolaichik
closed
9 years ago
4
TermGen: correct coordinates
#5
nikolaichik
closed
9 years ago
2
TermGen info improvement
#4
nikolaichik
closed
9 years ago
2
Reporting number of annotated features by HmmGen
#3
nikolaichik
closed
9 years ago
2
Length threshold
#2
faultby
closed
9 years ago
7
Duplicate removing for HmmGen.py needed
#1
nikolaichik
closed
9 years ago
1