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nipreps
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mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
http://mriqc.readthedocs.io
Apache License 2.0
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New metric: Signal drift delta and speed (over the TR)
#1256
oesteban
opened
2 months ago
0
New metric: Directional derivative along Z to find slices with global signal drop
#1255
oesteban
opened
2 months ago
0
ENH: Improve documentation and logging of *SynthStrip*'s model
#1254
oesteban
closed
2 months ago
0
ENH: Improve logging of runtime
#1253
oesteban
closed
2 months ago
0
Trait Error after installing SynthStrip
#1252
madeleinebarter
closed
2 months ago
2
MAINT: Prevent pandas-originating deprecation warning
#1251
oesteban
closed
2 months ago
0
BOLD group reports - use different hues, e.g., for different tasks
#1250
oesteban
opened
2 months ago
0
ENH: Expose a command-line option for minimum DWI volumes
#1249
oesteban
closed
2 months ago
0
Type annotation of config module
#1248
oesteban
opened
2 months ago
4
Generate a summary reportlet for DWI too
#1247
oesteban
opened
2 months ago
2
Add a carpetplot reportlet to the DWI reports
#1246
oesteban
opened
2 months ago
1
FIX: Revise config save/load and update inputs after dropping
#1245
oesteban
closed
2 months ago
0
Dropping inputs on the basis of too-short runs crashes at report generation (DWI)
#1244
oesteban
closed
2 months ago
0
FIX: Sloppy merge
#1243
oesteban
closed
2 months ago
0
FIX: Drift should not be estimated when less than three low-b volumes present
#1242
oesteban
closed
2 months ago
0
FIX: Handle ``NUMEXPR_MAX_THREADS`` like ``OMP_NUM_THREADS``
#1241
oesteban
closed
2 months ago
0
FIX: Exclude DWI runs with insufficient orientations or missing bvals
#1240
oesteban
closed
2 months ago
0
FIX: Avert costly ``BIDSLayout.__repr__`` calls when saving config
#1239
oesteban
closed
2 months ago
0
ENH: Improve error handling and logging
#1238
oesteban
closed
2 months ago
0
Warning from ``numexpr.utils`` - Note: NumExpr detected 36 cores but NUMEXPR_MAX_THREADS not set, so enforcing safe limit of 8
#1237
oesteban
closed
2 months ago
0
Inefficient BIDS Layout initialization
#1236
oesteban
closed
2 months ago
0
MRIQC TypeError: ‘reversed’ is an invalid keyword argument for sort()
#1235
WangYunHong98
closed
2 months ago
2
FIX: Duplicate node in anatomical workflow
#1234
oesteban
closed
2 months ago
0
ENH: Add b-vector angular deviations as IQMs
#1233
oesteban
closed
2 months ago
0
Potential bug: duplciate `tpms_std2t1w` nodes in spatial_normalization workflow
#1232
tclose
closed
2 months ago
1
Refine PIESNO
#1231
arokem
opened
2 months ago
1
ENH: Move from DTI to DKI with multishell data
#1230
oesteban
closed
2 months ago
0
ENH: Noise floor estimated with PCA (``dwidenoise``) as an IQM
#1229
oesteban
closed
2 months ago
0
ENH: Use MAD for robust estimation of sigma in the CC mask
#1228
oesteban
closed
2 months ago
0
ENH: Integrate PIESNO noise mask and sigma estimation
#1227
oesteban
closed
2 months ago
0
ENH: Add new IQM for DWI -- NDC
#1226
oesteban
closed
2 months ago
0
ENH: Add FA-based IQMs (nans percentage and degenerate percentage)
#1225
oesteban
closed
2 months ago
1
ENH: Add computation of spiking voxels mask and percent IQMs
#1224
oesteban
closed
2 months ago
2
DEC maps for DWI workflow
#1223
araikes
opened
3 months ago
3
Re-enable spikes percentage IQMs after first stab at DWI IQMs
#1222
oesteban
closed
2 months ago
0
Potential diffusion metric: average/max deviation from nominal b-vector
#1221
oesteban
closed
3 months ago
1
Scrollable MRIQC rating widget
#1220
effigies
closed
3 months ago
0
ENH: Revise summary stats extraction and include controlled roundings
#1219
oesteban
closed
3 months ago
0
Allow DKI to be used in place of DTI?
#1218
arokem
closed
2 months ago
2
DOC: Add changelog to documentation
#1217
oesteban
closed
3 months ago
0
Brainstorming potential IQMs (image quality metrics) for DWI
#1216
oesteban
closed
2 months ago
13
Do not clean up FA for degenerate tensors within DTI node
#1215
oesteban
closed
3 months ago
2
MAINT: Update contributor affiliation in ``CONTRIBUTORS.md``
#1214
oesteban
closed
3 months ago
2
black → ruff format
#1213
DimitriPapadopoulos
closed
2 months ago
0
CI: flake8 → ruff check
#1212
DimitriPapadopoulos
closed
3 months ago
4
FIX: Typo in sorted(..., reverse=True) call
#1211
araikes
closed
3 months ago
1
MRIQC crashes on T1w
#1210
araikes
closed
3 months ago
3
Do not apply drift correction if only one b=0 is provided (or calculate it with the lowest shell?)
#1209
araikes
closed
2 months ago
3
MAINT: Add ``pytest-env`` as a dependency
#1208
oesteban
closed
3 months ago
0
FIX: Missing conection to head-motion estimation node in DWI workflow
#1207
oesteban
closed
3 months ago
0
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