RENIN

Regulatory Network Inference with single cell multiomic data

RENIN generates parametric gene regulatory networks, predicting both cis-regulatory elements and transcription factors.

Installation

You can install RENIN with devtools:

library(devtools)
install_github("nledru/RENIN")

Additional dependencies are listed in the DESCRIPTION file. RENIN is designed to work within the Seurat workflow.

Running RENIN

For a brief introduction to running RENIN on a single cell dataset, see the vignette at Getting started.