nlesc-ave ave-rest-service issues

nlesc-ave / ave-rest-service

visualize (clustered) single-nucleotide variants across genomes

Apache License 2.0

1 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

AVE2 register data failed

#47 aude-darracq opened 5 years ago
1
gff.as

#46 EdwinvZon closed 6 years ago
1
Issue with installation

#45 aude-darracq closed 5 years ago
2
GFF to BB

#44 EdwinvZon opened 6 years ago
12
Running avedata elsewhere then where settings.cfg is located fails

#43 JorisBenschop opened 6 years ago
2
avedata register crash with cryptic message

#42 JorisBenschop opened 6 years ago
1
Stop url encoding species id on server, only do on client

#41 JorisBenschop opened 6 years ago
5
Add the bcf filename to the genomes api response

#40 sverhoeven closed 6 years ago
0
Loss of reference sequence after some navigating

#39 sverhoeven opened 6 years ago
1
During registration of urls check CORS headers

#38 sverhoeven opened 6 years ago
0
Ability to highlight a sample

#37 sverhoeven opened 6 years ago
1
Use consensus sequence for each sample

#36 sverhoeven closed 6 years ago
2
Haplotypes performance

#35 sverhoeven closed 6 years ago
0
The haplotypes endpoint returns duplicated data

#34 sverhoeven opened 6 years ago
1
Swagger spec should have info.version filled from avedata/version.py

#33 sverhoeven closed 7 years ago
0
CLI should have `--version` option

#32 sverhoeven closed 7 years ago
0
Swagger ui does not work inside Docker container

#31 sverhoeven closed 7 years ago
0
Swagger ui inside Docker container is using wrong base url

#30 sverhoeven closed 7 years ago
1
How to add an accession to an existing bcf file?

#29 sverhoeven opened 7 years ago
1
Allow text search to return more the top 10 hits

#28 sverhoeven opened 7 years ago
0
How are region without reads treated?

#27 sverhoeven closed 6 years ago
1
How are small indels treated?

#26 sverhoeven opened 7 years ago
2
Add subcommand to de-register datafiles

#25 sverhoeven closed 6 years ago
0
dont ignore heterozygosity variants

#24 sverhoeven closed 6 years ago
3
Docker file for service

#23 sverhoeven closed 7 years ago
1
Configure max region region

#22 sverhoeven closed 7 years ago
0
Use more performing wsgi server in production

#21 sverhoeven closed 7 years ago
1
error fetch haplotypes

#20 sverhoeven closed 7 years ago
1
Add LICENSE

#19 sverhoeven closed 7 years ago
0
Endpoint to download sequence of a haplotype

#18 sverhoeven closed 7 years ago
1
bigBED vs gff3

#17 mkuzak closed 7 years ago
1
make sure that the locations are used properly across application

#16 mkuzak opened 7 years ago
0
Example phenotype annotation dataset for Tomato

#15 sverhoeven closed 7 years ago
1
Feature search endpoint

#14 sverhoeven closed 7 years ago
0
Endpoint for fasta sequence of haplotype

#13 sverhoeven closed 7 years ago
1
Host 2bit file by ave service or somewhere else?

#12 sverhoeven closed 7 years ago
1
Update species endpoint implementation

#11 sverhoeven closed 7 years ago
0
Implement genome information endpoint

#10 sverhoeven closed 7 years ago
2
Implement genes of the genomic region endpoint

#9 sverhoeven closed 7 years ago
4
update swagger specification with examples

#8 mkuzak opened 7 years ago
0
Implement list of genomes for selected species endpoint

#7 mkuzak closed 7 years ago
1
Endpoint to fetch snps for collection of accessions on a location

#6 sverhoeven closed 7 years ago
1
Haplotype clustering

#5 sverhoeven closed 7 years ago
2
Implement haplotypes of the genomic region endpoint

#4 sverhoeven closed 7 years ago
2
Implement genomic annotations of the genomic region endpoint

#3 sverhoeven closed 7 years ago
0
Register 2bit file for genome of a species

#2 sverhoeven closed 7 years ago
3
Add features table

#1 sverhoeven closed 7 years ago
0