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nmquijada
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tormes
Making whole bacterial genome sequencing data analysis easy
GNU General Public License v3.0
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Update README.md
#74
nmquijada
closed
1 week ago
0
Bootstrap value?
#73
carmennns2
opened
7 months ago
0
installing kraken2 database
#72
claramicro
opened
10 months ago
2
Pipeline usage with scaffolds.fasta as input file
#71
Khabibullin543
opened
11 months ago
0
tormes-setup ERROR minikraken2
#70
Rubenjues
opened
1 year ago
1
reference-guided genome assembly
#69
ariasamin
opened
1 year ago
6
Tormes skipping Kraken2 taxaonomic assignment for few files
#68
vsmicrogenomics
closed
1 year ago
3
every time the same error occurs that solving environment killed
#67
HK0911
opened
1 year ago
3
Contig_name_shortener.sh
#66
biobrad
opened
1 year ago
0
Pangenome analysis was not performed.
#65
ariasamin
closed
1 year ago
4
"Warnings" in Pangenome tree (core genes) and error with dplyr and tibble
#64
Panchastico
opened
1 year ago
4
problems with report generation
#63
Khabibullin543
closed
1 year ago
4
New R issue ('ape' package fail) - With solution
#62
biobrad
closed
1 year ago
4
Annotation Paused
#61
zgerbec
opened
1 year ago
4
Eternal solving environment tormes-1.3.0.yml
#60
imonteroo
closed
1 year ago
5
Run stopped
#59
ddesai5
opened
2 years ago
2
Installation Error
#58
SrivastavaM
closed
2 years ago
3
error when "resuming" run
#57
shlomobl
closed
1 year ago
3
custom protein database
#56
shlomobl
opened
2 years ago
4
Custom databases
#55
shlomobl
closed
2 years ago
1
Re-run with subset of samples
#54
shlomobl
opened
2 years ago
2
tormes html report file could not be created
#53
ryobon-dev
closed
2 years ago
8
output directory
#52
plantman8
opened
2 years ago
2
tormes-setup error
#51
jysi-lab
closed
2 years ago
5
ggTree installation error - part 2
#50
biobrad
closed
1 year ago
4
Suggestion - Incorporate checkpointing
#49
Steven-Kemp
opened
2 years ago
4
Conda glibc issue
#48
herrzhull
closed
2 years ago
9
ggtree installation error
#47
stevin-wilson
closed
2 years ago
1
Large difference in quality of the assembly using different filtering methods
#46
valery-shap
opened
2 years ago
3
problem in "--isolate --gene-finding"
#45
ariasamin
closed
2 years ago
4
tormes_setup should ignore/remove pre-existing tormes-setup-warnings.log
#44
mglubber
opened
3 years ago
1
ggtree .html report issue
#43
geomili
closed
3 years ago
3
Installation Issue macOS BigSur
#42
ftettamanti
opened
3 years ago
30
Looks error in renaming of ecoli_vf gene fedB (fedC protein) and fedC (fedD protein).
#41
Vikash84
closed
3 years ago
1
--genera Escherichia giving error
#40
Vikash84
closed
3 years ago
3
ERROR Binaries
#39
Beta-INC
opened
3 years ago
3
tormes_report.Rmd issue
#38
geomili
closed
3 years ago
9
RDPTools not found
#37
SilvanoS
closed
3 years ago
18
Spades memory issue in 1.2 but not 1.1
#36
dkarig
closed
3 years ago
6
WARNING: html report file could not be created
#35
valery-shap
closed
3 years ago
3
Nextseq reads
#34
valery-shap
closed
3 years ago
8
Release files for 1.2.1 only contain files for 1.2.0
#33
FokkeDijkstra
closed
3 years ago
3
Warning: Ignoring 26 observations
#32
alantsangmb
closed
4 years ago
3
FimH typing was not performed
#31
nmquijada
closed
4 years ago
1
kraken2 does not generate any result due to wrong PATH to its database in config_file.txt
#30
nmquijada
closed
4 years ago
3
which R and ggtree should be installed?
#29
alantsangmb
closed
4 years ago
5
Virulence genes and plasmids
#28
pavlo888
closed
3 years ago
18
Report is not generated when samples don't resolve MLST
#27
nmquijada
closed
4 years ago
1
re fimH typing not performed
#26
bhclement
closed
4 years ago
13
Tormes: ERROR: could not find input file
#25
Stigimoloch
opened
4 years ago
2
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