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noamteyssier
/
crispr_screen
Efficient Differential Expression and Gene Aggregation for CRISPR screens.
https://noamteyssier.github.io/crispr_screen/
MIT License
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121 report the null log2fc standard deviation in results
#122
noamteyssier
closed
1 year ago
0
report the null log2fc standard deviation in results
#121
noamteyssier
closed
1 year ago
0
bump version + intc version
#120
noamteyssier
closed
1 year ago
0
fix intc bug with alternative
#119
noamteyssier
closed
1 year ago
0
117 update crispr screen to use newer intc algorithm
#118
noamteyssier
closed
1 year ago
0
update crispr_screen to use newer INTC algorithm
#117
noamteyssier
closed
1 year ago
0
write all output files to a directory
#116
noamteyssier
opened
1 year ago
0
114 update intc
#115
noamteyssier
closed
1 year ago
0
update intc
#114
noamteyssier
closed
1 year ago
0
112 update formatting
#113
noamteyssier
closed
1 year ago
0
update formatting
#112
noamteyssier
closed
1 year ago
0
110 write out screenviz config
#111
noamteyssier
closed
1 year ago
0
write out screenviz config
#110
noamteyssier
closed
1 year ago
0
108 rename output files to reflect tsv
#109
noamteyssier
closed
1 year ago
0
rename output files to reflect tsv
#108
noamteyssier
closed
1 year ago
0
106 run inc method with product score instead of p value only
#107
noamteyssier
closed
1 year ago
1
Run -INC method with product score instead of p-value only
#106
noamteyssier
closed
1 year ago
0
104 fix bug where input table needs to be the same shape as the number of labels
#105
noamteyssier
closed
1 year ago
1
fix bug where input table needs to be the same shape as the number of labels
#104
noamteyssier
closed
1 year ago
0
102 write testing for macos
#103
noamteyssier
closed
1 year ago
0
write testing for macos
#102
noamteyssier
closed
1 year ago
0
100 minimal working website
#101
noamteyssier
closed
1 year ago
1
minimal working website
#100
noamteyssier
closed
1 year ago
0
98 prepare for crates upload
#99
noamteyssier
closed
1 year ago
1
prepare for crates upload
#98
noamteyssier
closed
1 year ago
0
96 log inc pvalue threshold
#97
noamteyssier
closed
1 year ago
0
log inc pvalue threshold
#96
noamteyssier
closed
1 year ago
0
94 use crate versions of rra and intc
#95
noamteyssier
closed
1 year ago
0
use crate versions of rra and intc
#94
noamteyssier
closed
1 year ago
0
92 write out base mean column onto sgrna results
#93
noamteyssier
closed
1 year ago
0
write out base_mean column onto sgrna results
#92
noamteyssier
closed
1 year ago
0
implement empirical FDR with non-targeting controls
#91
noamteyssier
closed
1 year ago
0
89 introduce squared mean dispersion modeling
#90
noamteyssier
closed
1 year ago
1
introduce edgeR dispersion modeling
#89
noamteyssier
closed
1 year ago
1
finish writing up methods
#88
noamteyssier
opened
1 year ago
0
included first pass on documentation
#87
noamteyssier
closed
1 year ago
1
66 add gene score to gene results
#86
noamteyssier
closed
1 year ago
1
84 include stronger tests on io
#85
noamteyssier
closed
1 year ago
1
include stronger tests on io
#84
noamteyssier
closed
1 year ago
0
82 add testing on aggregation methods and clean up code
#83
noamteyssier
closed
1 year ago
1
add testing on aggregation methods and clean up code
#82
noamteyssier
closed
1 year ago
0
80 add testing on enrichment
#81
noamteyssier
closed
1 year ago
1
add testing on enrichment
#80
noamteyssier
closed
1 year ago
0
78 better documentation on help
#79
noamteyssier
closed
1 year ago
0
better documentation on help
#78
noamteyssier
closed
1 year ago
0
65 add fold changes to gene results
#77
noamteyssier
closed
1 year ago
1
75 increase testing coverage
#76
noamteyssier
closed
1 year ago
0
increase testing coverage
#75
noamteyssier
closed
1 year ago
0
72 incorporate coverage metrics
#74
noamteyssier
closed
1 year ago
0
write documentation site with mdbook
#73
noamteyssier
closed
1 year ago
0
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