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noamteyssier
/
crispr_screen
Efficient Differential Expression and Gene Aggregation for CRISPR screens.
https://noamteyssier.github.io/crispr_screen/
MIT License
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incorporate coverage metrics
#72
noamteyssier
closed
1 year ago
0
70 linting and formatting
#71
noamteyssier
closed
1 year ago
0
linting and formatting
#70
noamteyssier
closed
1 year ago
0
68 drop polars as a dependency
#69
noamteyssier
closed
1 year ago
0
drop polars as a dependency
#68
noamteyssier
closed
1 year ago
0
made weighted loss the default value
#67
noamteyssier
closed
1 year ago
0
add gene score to gene results
#66
noamteyssier
closed
1 year ago
0
add fold changes to gene results
#65
noamteyssier
closed
1 year ago
0
make wols the default
#64
noamteyssier
closed
1 year ago
0
move enrichment testing to statrs functions
#63
noamteyssier
closed
1 year ago
1
61 implement weighted least squares regression
#62
noamteyssier
closed
1 year ago
0
implement weighted least squares regression
#61
noamteyssier
closed
1 year ago
0
59 better approximate mageck with median instead of mean
#60
noamteyssier
closed
1 year ago
0
better approximate mageck with median instead of mean
#59
noamteyssier
closed
1 year ago
0
57 variable alpha threshold
#58
noamteyssier
closed
1 year ago
0
variable alpha threshold
#57
noamteyssier
closed
1 year ago
0
55 fix sgrna table printout with incorrect means
#56
noamteyssier
closed
1 year ago
0
fix sgrna table printout with incorrect means
#55
noamteyssier
closed
1 year ago
0
53 hard switch to total normalization
#54
noamteyssier
closed
1 year ago
0
hard switch to total normalization
#53
noamteyssier
closed
1 year ago
0
fix fdr error for double zeros
#52
noamteyssier
closed
1 year ago
0
set bound on probability calculation
#51
noamteyssier
closed
1 year ago
0
fix bug on total normalization
#50
noamteyssier
closed
1 year ago
0
48 include options in help descriptions
#49
noamteyssier
closed
1 year ago
0
include options in help descriptions
#48
noamteyssier
closed
1 year ago
0
46 fix bug where multiple controls and treatments cannot be provided as input
#47
noamteyssier
closed
1 year ago
0
fix bug where multiple controls and treatments cannot be provided as input
#46
noamteyssier
closed
1 year ago
0
25 better error handling is control labels or treatment labes are not found in dataset
#45
noamteyssier
closed
1 year ago
0
Spin out alpha-RRA into separate crate
#44
noamteyssier
closed
1 year ago
1
propagate procedure pass through from args to aggregation and sgrna r…
#43
noamteyssier
closed
2 years ago
0
optional multiple hypothesis correction
#42
noamteyssier
closed
2 years ago
0
implement truncated normal sgrna enrichment calculation
#41
noamteyssier
opened
2 years ago
0
moved dataframe creation to separate functions and call them from mageck
#40
noamteyssier
closed
2 years ago
0
separate functions for sgrna and gene dataframe creation
#39
noamteyssier
closed
2 years ago
0
37 create sgrna result struct to clean up variable namespace
#38
noamteyssier
closed
2 years ago
0
create sgrna result struct to clean up variable namespace
#37
noamteyssier
closed
2 years ago
0
19 implement benjamini hochberg false discovery rate correction
#36
noamteyssier
closed
2 years ago
0
fix bug where < should be <= in empirical cdf
#35
noamteyssier
closed
2 years ago
0
Explore weird asymptotic behavior with pvalues in RRA around 0.4
#34
noamteyssier
closed
2 years ago
0
confirm all pvalue arrays are sorted when passing into rra
#33
noamteyssier
closed
2 years ago
0
replace beta_inc with explicit beta cdf
#32
noamteyssier
closed
2 years ago
0
30 return gene aggregation score in final results
#31
noamteyssier
closed
2 years ago
0
return gene aggregation score in final results
#30
noamteyssier
closed
2 years ago
0
Aggregate all filtering functions into utils
#29
noamteyssier
closed
2 years ago
0
26 remove zero counts from rra calculation
#28
noamteyssier
closed
2 years ago
0
23 provide logging information with optional quiet argument
#27
noamteyssier
closed
2 years ago
0
Remove zero counts from RRA calculation
#26
noamteyssier
closed
2 years ago
0
Better error handling is control labels or treatment labes are not found in dataset
#25
noamteyssier
closed
1 year ago
0
added a zscore filter on the logged ols calculation
#24
noamteyssier
closed
2 years ago
0
Provide logging information with optional quiet argument
#23
noamteyssier
closed
2 years ago
0
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