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noamteyssier
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gia
gia: Genomic Interval Arithmetic
https://noamteyssier.github.io/gia/
MIT License
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Spin out a new io crate
#119
noamteyssier
opened
2 months ago
0
Inconsistancey between gia and bedtools for unionbedg
#118
mrvollger
opened
4 months ago
1
Consider adding gia to bioconda?
#117
mrvollger
closed
2 months ago
7
115 build a join subcommand
#116
noamteyssier
closed
5 months ago
0
build a join subcommand
#115
noamteyssier
closed
5 months ago
0
113 include parallel processing on coverage
#114
noamteyssier
closed
5 months ago
0
include parallel processing on coverage
#113
noamteyssier
closed
5 months ago
0
Gia 2.0
#112
noamteyssier
closed
5 months ago
0
106 allow multiple inputs to b for dual inputs
#111
noamteyssier
closed
5 months ago
0
107 stranded methods in get fasta
#110
noamteyssier
closed
5 months ago
0
108 allow gzip fastq in get fasta
#109
noamteyssier
closed
5 months ago
0
allow gzip fastq in get-fasta
#108
noamteyssier
closed
5 months ago
1
Stranded methods in get-fasta
#107
noamteyssier
closed
5 months ago
0
allow multiple inputs to B for dual inputs
#106
noamteyssier
closed
5 months ago
1
104 introduce a bam coverage method
#105
noamteyssier
closed
5 months ago
0
introduce a bam coverage method
#104
noamteyssier
closed
5 months ago
1
31 stranded methods
#103
noamteyssier
closed
5 months ago
0
100 add vcf centric commands
#102
noamteyssier
closed
5 months ago
0
99 add bam centric methods as separate subcommand
#101
noamteyssier
closed
5 months ago
0
add vcf-centric commands
#100
noamteyssier
closed
5 months ago
1
add bam-centric methods as separate subcommand
#99
noamteyssier
closed
5 months ago
2
97 improve documentation in options at the help menu
#98
noamteyssier
closed
6 months ago
0
improve documentation in options at the help menu
#97
noamteyssier
closed
6 months ago
1
95 implement cluster subcommand
#96
noamteyssier
closed
6 months ago
0
implement cluster subcommand
#95
noamteyssier
closed
6 months ago
1
93 reproduce unionbedg method
#94
noamteyssier
closed
6 months ago
0
reproduce unionbedg method
#93
noamteyssier
closed
6 months ago
1
91 add a segment method which generates non overlapping regions of a single interval container
#92
noamteyssier
closed
6 months ago
0
add a segment method which generates non-overlapping regions of a single interval container
#91
noamteyssier
closed
6 months ago
1
89 add spacing as subcommand
#90
noamteyssier
closed
6 months ago
0
add spacing as subcommand
#89
noamteyssier
closed
6 months ago
1
87 add a file format for gffgtf
#88
noamteyssier
closed
6 months ago
0
add a file format for gff/gtf
#87
noamteyssier
closed
6 months ago
1
85 add a catch all meta interval for formats that cant be automatically determined
#86
noamteyssier
closed
7 months ago
0
Add a catch-all meta interval for formats that can't be automatically determined
#85
noamteyssier
closed
7 months ago
0
83 add bed4 as an input format
#84
noamteyssier
closed
7 months ago
0
add bed4 as an input format
#83
noamteyssier
closed
7 months ago
0
81 restructure cli module and use argument structs to minimize function call signatures
#82
noamteyssier
closed
7 months ago
0
restructure cli module and use argument structs to minimize function call signatures
#81
noamteyssier
closed
7 months ago
0
79 build naive coverage subcommand
#80
noamteyssier
closed
8 months ago
0
build naive coverage subcommand
#79
noamteyssier
closed
7 months ago
0
77 create windowed overlaps
#78
noamteyssier
closed
8 months ago
0
create windowed overlaps
#77
noamteyssier
closed
8 months ago
0
75 implement shift subcommand
#76
noamteyssier
closed
8 months ago
0
Implement shift subcommand
#75
noamteyssier
closed
8 months ago
0
73 implement flank command
#74
noamteyssier
closed
8 months ago
0
Implement flank command
#73
noamteyssier
closed
8 months ago
0
66 mix file formats when applicable
#72
noamteyssier
closed
8 months ago
0
Use built in bed formats in bedrs
#71
noamteyssier
closed
8 months ago
1
Remove all Container trait and use IntervalContainers
#70
noamteyssier
closed
8 months ago
1
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