FYI for anyone else running on a Mac instead of Linux machine, the location for MinKNOW config files is different. The below should work for MacOS:
sudo rsync -a conf/package/flow_cells.toml /Applications/MinKNOW.app/Contents/Resources/conf/package
sudo rsync -a conf/package/sequencing/*.toml /Applications/MinKNOW.app/Contents/Resources/conf/package/sequencing
Thanks again for solving this short read RNA issue!
FYI for anyone else running on a Mac instead of Linux machine, the location for MinKNOW config files is different. The below should work for MacOS:
Thanks again for solving this short read RNA issue!