nsalomonis altanalyze issues

nsalomonis / altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

http://www.altanalyze.org

Apache License 2.0

99 stars 30 forks source link

issues

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Is it possible to use Ensembl version 110 as the database for hg38?

#55 santataRU opened 2 weeks ago
0
Error with sklearn on installing by pip

#54 wook2014 opened 1 year ago
6
The config folder cannot be found.

#53 wososa opened 2 years ago
0
Error running RNASeq analysis with fastq files as input and assigned to groups

#52 jaydoc opened 2 years ago
2
Error running alatanalyze after pip install -- FileNotFoundError: [Errno 2] No such file or directory: 'altanalyze'

#51 c2b2pss opened 2 years ago
4
Predicted sample export failed in GUI

#50 aniruddh-shukla opened 3 years ago
5
Errors and differences in results while running the CLI version for ICGS2

#49 therealgenna opened 3 years ago
1
Error: No such file or directory: python2.7/site-packages/altanalyze/Config//arrays.txt

#48 therealgenna opened 3 years ago
13
The viewer in not opening

#47 ChrisGai opened 4 years ago
0
PageRank presents with an error

#46 nsalomonis opened 4 years ago
1
How to enable cell type annotation like previous AltAnalyze Version.

#45 ewijaya opened 4 years ago
4
TPM or RPKM?

#44 nsalomonis closed 4 years ago
1
Containerization?

#43 YogiOnBioinformatics opened 4 years ago
1
WikiPathways pathway visualization webservice not working

#42 nsalomonis opened 4 years ago
0
Kallisto-splice empty BAM files

#41 nsalomonis closed 4 years ago
1
Windows serialization load error - misopy

#40 nsalomonis closed 4 years ago
1
Coordinate mismatch for extremely small exon regions

#39 nsalomonis opened 4 years ago
0
A custom database

#38 OlgaVT closed 4 years ago
2
Error in altanalyze calling getopt.py

#37 tmari closed 4 years ago
1
Felis Catus Only AltAnalyze Issue

#36 proteasome closed 4 years ago
3
Fix minor bugs in GO-Elite: Mm MPhenoOntology and Hs WikiPathways parsing

#35 warrenmcg opened 7 years ago
0
Batch effect error

#34 GoogleCodeExporter closed 4 years ago
2
Error message in processing CEL files

#33 GoogleCodeExporter closed 4 years ago
0
Wish for checkboxes and option to save settings

#32 GoogleCodeExporter closed 4 years ago
1
GO-Elite Reports a goelite_run variable error

#31 GoogleCodeExporter closed 4 years ago
0
Which version of species-specific database (EnsMart) for mm9

#30 GoogleCodeExporter closed 4 years ago
1
File "WikiPathways_webservice.pyc", line 64, in getPathwayAs NameError: global name 'client' is not defined

#29 GoogleCodeExporter closed 4 years ago
0
Won't run in OS 10.9.1 to "Add new species"

#28 GoogleCodeExporter closed 4 years ago
6
Downloading and installing a species-specific database via command-line requires version

#27 GoogleCodeExporter closed 4 years ago
1
Group Files Annotations

#26 GoogleCodeExporter closed 4 years ago
0
fewer options displayed

#25 GoogleCodeExporter closed 9 years ago
2
unable to download database files

#24 GoogleCodeExporter closed 4 years ago
1
setup.py py2exe includes bug

#23 GoogleCodeExporter closed 4 years ago
1
AltAnalyze v.2.0.7 crash - local variable 'log_fold'

#22 GoogleCodeExporter closed 9 years ago
1
Run compiled versions via CommandLine

#21 GoogleCodeExporter closed 4 years ago
1
pair end rna seq issue

#20 GoogleCodeExporter closed 9 years ago
3
Misc. 2.0.7 related issues

#19 GoogleCodeExporter closed 9 years ago
1
Buggy 2.0.7

#18 GoogleCodeExporter closed 4 years ago
1
Error encountered: Exon or junction is zero

#17 GoogleCodeExporter closed 4 years ago
4
NKX2-5 missing from HuEx database

#16 GoogleCodeExporter closed 4 years ago
1
UI function defaults stored in option_db

#15 GoogleCodeExporter closed 4 years ago
1
Cannot open altanalyze on mac

#14 GoogleCodeExporter opened 9 years ago
2
Missing exon array probesets from database

#13 GoogleCodeExporter closed 4 years ago
1
Bugs with constitutive vs. known exons (e.g. core probesets)

#12 GoogleCodeExporter closed 4 years ago
0
Cytoscape installation fails without warning

#11 GoogleCodeExporter closed 4 years ago
2
Reduce database size

#10 GoogleCodeExporter opened 9 years ago
0
2.01 alpha non-constitutive gene inclusion issue

#9 GoogleCodeExporter closed 4 years ago
0
Any problems in RNA-seq anlysis

#8 GoogleCodeExporter closed 4 years ago
7
Changes to ASPIRE p-value calculation

#7 GoogleCodeExporter closed 9 years ago
0
Gene expression filtering not working in command-line mode

#6 GoogleCodeExporter closed 4 years ago
0