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nubs01
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blechpy
Python package for extraction, spike clustering and processing of Intan recorded neural data for Katz Lab
MIT License
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adding different constraints to hmm
#69
danielsvedberg
closed
7 months ago
0
some changes for update
#68
danielsvedberg
closed
7 months ago
0
lots of updates
#67
danielsvedberg
closed
9 months ago
0
updated proj._change_root() to streamline root switching
#66
danielsvedberg
closed
1 year ago
0
batch of updates
#65
danielsvedberg
closed
1 year ago
0
updates
#64
danielsvedberg
closed
1 year ago
0
bug from hell when running HMMs on jetstream
#63
danielsvedberg
opened
1 year ago
0
updates
#62
danielsvedberg
closed
1 year ago
0
divide by zero error with zero-rate states in hmm, prepare for deploy
#61
danielsvedberg
closed
1 year ago
0
log(0) error when rate is 0
#60
danielsvedberg
closed
1 year ago
1
stuff for last update
#59
danielsvedberg
closed
1 year ago
0
updates
#58
danielsvedberg
closed
1 year ago
0
updates
#57
danielsvedberg
closed
1 year ago
0
Hmm changes
#56
danielsvedberg
closed
1 year ago
0
Adjust defaults, added methods, tweak and bug fix for poissonhmm
#55
danielsvedberg
closed
1 year ago
0
many things
#54
danielsvedberg
closed
1 year ago
0
Edit Error Message For Channels Marked Dead During Sorting
#53
22AviPatel
opened
1 year ago
0
"ValueError: invalid literal for int() with base 10: '-'" When running phmm.HmmHandler() with multiple tastes in params
#52
danielsvedberg
opened
2 years ago
0
hmmhandler.run() freezes if there are dig ins with empty trials
#51
danielsvedberg
opened
2 years ago
0
added psth plotting and adapted to new intan software
#50
danielsvedberg
closed
2 years ago
0
added OE64EIB CAR defaults, updated tutorial
#49
danielsvedberg
closed
2 years ago
0
bug fix for broken selection boxes during sorting, updated tutorial
#48
danielsvedberg
closed
2 years ago
0
added plot_hmms method to project to conveniently run handler.plot_saved_models() in parallel
#47
danielsvedberg
closed
2 years ago
0
Change unit arrays to start at valve open rather than close
#46
danielsvedberg
closed
2 years ago
0
v2.1.31
#45
danielsvedberg
closed
2 years ago
0
fuck ya life! "bing bong"
#44
danielsvedberg
closed
2 years ago
0
Bump numpy from 1.18.5 to 1.22.0
#43
dependabot[bot]
opened
2 years ago
0
-updated requirements.txt
#42
danielsvedberg
closed
2 years ago
0
updated readme.md
#41
danielsvedberg
closed
2 years ago
0
2.1.28
#40
danielsvedberg
closed
2 years ago
0
some stuff
#39
danielsvedberg
closed
2 years ago
0
blech_clust_run(umap=True)->Terminated worker error : A worker process managed by the executor was unexpectedly terminated. This could be caused by a segmentation fault while calling the function or by an excessive memory usage causing the Operating System to kill the worker.
#38
danielsvedberg
opened
2 years ago
3
changed detect_spikes and blech_clust_run in dataset.py back to use d…
#37
danielsvedberg
closed
2 years ago
0
blech_clust_run() ValueError: need at least one array to concatenate
#36
danielsvedberg
opened
2 years ago
0
Joblib versioning
#35
danielsvedberg
closed
1 year ago
3
added make_rec_groups() and rec_groups attribute to project object
#34
danielsvedberg
closed
2 years ago
0
Added order_dict to experiment object
#33
danielsvedberg
closed
2 years ago
0
added field "order dict" to experiment object, other bug fixes/comments
#32
danielsvedberg
closed
2 years ago
1
AttributeError: 'Dataframe' object has no attribute '_data'; dat.save() destroys original save file
#31
danielsvedberg
closed
1 year ago
2
edited environment.yml
#30
danielsvedberg
closed
2 years ago
0
fixed variable name typo
#29
danielsvedberg
closed
3 years ago
0
Line references non-existent variable 'stats'
#28
danielsvedberg
closed
3 years ago
1
Bump pyyaml from 5.3 to 5.4
#27
dependabot[bot]
closed
3 years ago
0
fixed bilateral64 electrode indices
#26
danielsvedberg
closed
3 years ago
0
Update requirements.txt to fix errors
#25
thomasrgray
closed
3 years ago
0
Issue/Error running blech clust (tried both with mult false and true)
#24
thomasrgray
closed
3 years ago
1
Running detect_spikes(multi_process = True) fails and hangs because Macs hate forking
#23
danielsvedberg
opened
3 years ago
1
bilateral64 should start with 0
#22
danielsvedberg
closed
3 years ago
1
Error importing blechpy over ssh
#21
danielsvedberg
closed
2 years ago
2
tk windows clipped at bottom on mac computers during dataset.initParams()
#20
danielsvedberg
opened
3 years ago
0
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