nygenome Conpair issues

nygenome / Conpair

Concordance and contamination estimator for tumor–normal pairs

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issues

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Title: Missing Conditional Likelihood Functions for Certain Genotype Combinations

#25 chaopower-zhang closed 3 weeks ago
1
bugfix: fixed caclulation of downsampling fraction for high-coverage …

#24 willhooper closed 1 month ago
0
Create output file for samples that have no overlapping markers

#23 MareikeJaniak opened 1 year ago
0
Longer analysis time for WES

#22 CirclesYuan opened 2 years ago
1
Conpair compatibility with GATK4 latest version

#21 Huma-Shehwana opened 2 years ago
1
Conpair not compatible with GATK4.2.3

#20 Huma-Shehwana opened 2 years ago
0
Regarding of interpretation and utilization

#19 hmkim opened 3 years ago
0
IndexError: list index out of range

#18 stroke1989 closed 2 weeks ago
3
Compatible with rat genome?

#17 danielanach opened 3 years ago
0
Conda package?

#16 brucemoran opened 4 years ago
0
fix: high cov pushed all likelihoods to 0

#15 JenniferShelton closed 4 years ago
0
docker image

#14 wgharib opened 4 years ago
0
panel

#13 feihongloveworld opened 5 years ago
0
Package the tool. Support gatk4 from conda. Add --genome option.

#12 vladsavelyev opened 6 years ago
0
Support GATK 4

#11 vladsavelyev opened 6 years ago
2
Tag a commit as a versioned release

#10 ckandoth closed 4 years ago
1
Python 3 compatibility

#9 supernifty closed 6 years ago
4
Markers for GRCH38

#8 Kinga277 opened 6 years ago
2
Is Conpair suitable for WES in single cell sequencing?

#7 epioneMW opened 6 years ago
1
Input files reads and reference have incompatible contigs.

#6 stevekm closed 6 years ago
2
Whethter Conpair is suitable for target panel sequencing for human ?

#5 zeronot closed 6 years ago
7
Cannot unset --markers value for run_gatk_pileup_for_sample.py

#4 mmokrejs closed 7 years ago
1
estimate_tumor_normal_contamination.py: ValueError: Not a bracketing interval.

#3 iranmdl closed 7 years ago
1
how to find the Tumor of the swapped samples

#2 tangwei1129 closed 7 years ago
1
Bugfix. One could not specify CONPAIR_DIR on the command line.

#1 micknudsen closed 8 years ago
1