obiba genobyte issues - Githubissues

obiba / genobyte

GenoByte is a Java API for storing and querying data resulting from the aggregation of high-throughput genotyping experiments across many subjects.

GNU General Public License v3.0

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Key-value store is accessible through Service Provider Interface (SPI)

#1 ymarcon closed 8 years ago
0
GEN-52: Filter and extraction of genomic information in VCF

#35 ymarcon opened 8 years ago
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GEN-51: Replace bitwise database engine

#34 ymarcon opened 8 years ago
0
GEN-47: Integrate a generic VCF parser and analyzer

#30 ymarcon opened 8 years ago
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GEN-43: Make a REST standalone application

#26 ymarcon opened 8 years ago
0
GEN-40: Move test fixtures (mock classes) into API codebase

#23 ymarcon closed 6 years ago
1
GEN-39: Log output is not what it seems, and is not specific

#22 ymarcon closed 6 years ago
1
GEN-35: Filtering SNPs in Mendel report does not filter test count

#20 ymarcon closed 6 years ago
1
GEN-34: Add ability to filter SNPs and Samples to inconsistency reports.

#19 ymarcon closed 6 years ago
2
GEN-33: Add a page describing the Query Syntax.

#18 ymarcon closed 6 years ago
2
GEN-32: Unit tests fail on windows

#17 ymarcon closed 6 years ago
2
GEN-31: Unit tests fail on Windows

#16 ymarcon opened 16 years ago
0
GEN-30: Mendelian inconsistencies calculation bug for trios

#15 ymarcon closed 6 years ago
3
GEN-29: The --load option doesn't work in Windows.

#14 ymarcon closed 6 years ago
2
GEN-27: Use long as unique key for BitVector storage

#12 ymarcon closed 6 years ago
1
GEN-74: Rework the transposition process

#40 ymarcon closed 6 years ago
2
GEN-63: Change Stats system to remove use of plain strings for inputParam / outputParam.

#39 ymarcon opened 17 years ago
0
GEN-62: Consider refactoring the inconsistencies package to use the statistics package

#38 ymarcon opened 17 years ago
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GEN-61: BitVector does not respect the Comparable contract

#37 ymarcon opened 17 years ago
2
GEN-50: Allow executing a Query on other Field sources (ie: a StatsPool instance)

#33 ymarcon opened 17 years ago
1
GEN-49: Consider adding a NULL keyword and NullQuery in the QueryParser

#32 ymarcon opened 17 years ago
0
GEN-48: Refactor Field, AbstractField and VolatileField

#31 ymarcon opened 17 years ago
0
GEN-46: Move mock objects to the main API packages.

#29 ymarcon opened 17 years ago
0
GEN-45: Remove dependency on iBatis DAO

#28 ymarcon opened 17 years ago
0
GEN-58: Remove dependency on commons-digester

#36 ymarcon opened 17 years ago
0
GEN-44: Merge the two MockBitwiseStore objects

#27 ymarcon opened 17 years ago
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GEN-42: bitwise.client and bitwise.genotype.cli should be merged

#25 ymarcon opened 17 years ago
0
GEN-41: BitwiseStoreUtil: Improve exists() method

#24 ymarcon opened 17 years ago
0
GEN-37: Bitwise operation methods (and, or, etc.) may cause an "ArrayOutOfBound" exception if the two BitVectors are not of the same size.

#21 ymarcon opened 17 years ago
2
GEN-28: Default Dictionaries for any given class should be definable in a properties file.

#13 ymarcon opened 17 years ago
0
GEN-18: Formalize the concept of Key Cache instead of relying on wrapping RecordManagers

#11 ymarcon opened 17 years ago
0
GEN-15: ResultVector NULL results handling should be improved.

#10 ymarcon opened 17 years ago
0
GEN-12: It would be nice to be able to setup more than one 'repository' per VM instance.

#9 ymarcon opened 17 years ago
0
GEN-7: write a first draft of a paper on genotype

#4 ymarcon closed 6 years ago
1
GEN-6: Add features to allow handling markers with more than two alleles (ie:A/C/T)

#3 ymarcon opened 17 years ago
0
GEN-3: Add feature to allow persisting genotype inconsistencies in a GenoByte store.

#2 ymarcon opened 17 years ago
0
GEN-11: Field and Dictionary coupling

#8 ymarcon opened 17 years ago
0
GEN-10: Lookup method of dictionary must return vectors of contant size

#7 ymarcon opened 17 years ago
0
GEN-9: Dictionary implementations should not encode specially so that Field behaves correctly

#6 ymarcon opened 17 years ago
0
GEN-8: Field should not require that all zeroes represent NULL

#5 ymarcon opened 17 years ago
0