Cannot access any commands after installation via RCON

Hello,

I have been using this plugin for a while now, and all of my friends and I love it. I have recently moved my server to my own equipment to self-host, and I need to access the console via RCON so I can send commands on the go. My problem is that while I am in the console via RCON, I have no permission to perform any commands, with the exception of Spigot specific commands (/restart, /tps, and /timings). I don't even have permission to use /help. I believe the issue lies somewhere in the vane-permissions plugin, because a fresh installation without the plugin can send commands just fine. Here is my config.yml contents for vane-permissions, if anything else is needed I would be happy to share it:

# vim: set tabstop=2 softtabstop=0 expandtab shiftwidth=2:

# The language for this module. The corresponding language file must be named
# lang-{lang}.yml. Specifying 'inherit' will load the value set for vane-core.
# Default: "inherit"
lang: "inherit"

# The module will only add functionality if this is set to true.
# Default: true
enabled: true

# Enable plugin metrics via bStats. You can opt-out here or via the global bStats
# configuration.
# Default: true
metrics_enabled: true

command_permission:
  # Enable command permission
  # Default: true
  enabled: true

command_vouch:
  # Enable command vouch
  # Default: true
  enabled: true

  # The group to assign to players when someone vouches for them.
  # Default: "user"
  vouch_group: "verified"

# The permission group that will be given to new players.
# Default: "default"
default_group: "user"

# The permission groups. A player can have multiple permission groups assigned.
# Permission groups can inherit other permission groups by specifying
# vane.permissions.groups.<groupname> as a permission.
# Default:
#   default:
#     - bukkit.command.help
#     - bukkit.broadcast
#     - bukkit.broadcast.user
#   verified:
#     - vane.permissions.groups.user
#     - vane.permissions.commands.vouch
#   admin:
#     - vane.permissions.groups.verified
#     - vane.admin.bypass_spawn_protection
#     - vane.*.commands.*
#   user:
#     - vane.permissions.groups.default
#     - vane.admin.commands.spawn
#     - vane.admin.modify_world
#     - vane.regions.commands.region
#     - vane.trifles.commands.heads
groups:
  default:
    - bukkit.command.help
    - bukkit.broadcast
    - bukkit.broadcast.user
  verified:
    - vane.permissions.groups.user
    - minecraft.command.whitelist
  admin:
    - vane.permissions.groups.verified
    - vane.*.commands.*
    - minecraft.*
  user:
    - vane.permissions.groups.default
    - vane.trifles.commands.heads
    - minecraft.command.msg
    - minecraft.command.me
    - minecraft.command.help
    - backpack.use
    - backpack.fullpickup
    - backpack.size.2
    - backpack.clean

# Remove all default permissions to start with a clean preset.
# Default: true
remove_defaults: true

# DO NOT CHANGE! The version of this config file. Used to determine if the config
# needs to be updated.
version: 1

Any help would be appreciated!

-Luke

oddlama / vane

Cannot access any commands after installation via RCON #54