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odelaneau
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shapeit4
Segmented HAPlotype Estimation and Imputation Tool
MIT License
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whatshap phase set variants
#39
Ahhgust
opened
3 years ago
3
core dumped at genotype_reader2.cpp:127
#38
verne91
opened
3 years ago
1
Segmentation fault
#37
verne91
closed
3 years ago
1
Not able to install SHAPEIT4 on Mac
#36
ryshi06
opened
3 years ago
1
Feature request for "shapeit -convert --input-graph --output-sample" ?
#35
pauline-ng
opened
3 years ago
1
Problems with shapeit output
#34
duzc-Repos
closed
3 years ago
0
ERROR: No variants to be phased in [/shapeit/out.recode.vcf.gz]
#33
bopohdr
opened
3 years ago
8
ERROR: Parsing line 0 : incorrect number of columns,
#32
NTNguyen13
closed
3 years ago
0
Fix incorrect description for --thread flag
#31
tedyun
opened
3 years ago
0
Error in compiling
#30
SIJAE-WOO
opened
3 years ago
1
Problem opening index file
#29
variani
opened
4 years ago
6
Error: Illegal instruction (core dumped)
#28
pauline-ng
closed
4 years ago
5
Segmentation Fault when running shapeit4 phasing
#27
liezl200
closed
4 years ago
3
ligateHaplotypes/equivalent in shapeit 4
#26
hardingnj
opened
4 years ago
2
Phasing multiallelic variants
#25
alimanfoo
opened
4 years ago
5
Encoding GT for male on nonpar X
#24
mcieslik-mctp
opened
4 years ago
2
"Underflow impossible to recover" error
#23
mbyrska
opened
4 years ago
1
Typo in version number?
#22
mbyrska
opened
4 years ago
1
Paternal and maternal haplotypes
#21
weishwu
opened
4 years ago
1
Error in compilation
#20
Asutu
opened
4 years ago
1
ERROR: Could not find conditioning haplotypes
#19
weishwu
opened
4 years ago
10
Semicolon missing in phaser_algorithm.cpp
#18
samfux84
closed
4 years ago
2
Phasing with whatshap phased variants
#17
weishwu
opened
4 years ago
8
How to prepare reference panel?
#16
weishwu
closed
4 years ago
0
Not able to install shapeit4 on Mac
#15
beausoleilmo
opened
4 years ago
3
Assertion `ngt_main == 2 * n_main_samples' failed.
#14
chlangley
closed
3 months ago
4
check for genetic_map being totally outside the vcf region
#13
jaredo
closed
4 years ago
1
unable to install shapeit
#12
dhwani2410
opened
4 years ago
2
Missing ;
#11
dpryan79
closed
3 years ago
0
Compiling problem with libhts.a(hfile_libcurl.o) in htslib1.9: In all functions are undefined reference to smth
#10
SillySabertooth
closed
4 years ago
3
Q: Feasibility of a phasing experiment
#9
messersc
opened
4 years ago
0
Fixed, -lcurl -lssl -lcrypto missing while make. and generalize PATH for EasyBuild
#8
sinonkt
opened
4 years ago
2
Compiling with shared libraries
#7
pcarbo
closed
3 years ago
4
Version 4.1 release
#6
pcarbo
closed
3 years ago
0
Compiling does not work with GCC 4.8.2
#5
samfux84
closed
4 years ago
3
shapeit4: src/phaser/phaser_algorithm.cpp:50: void phaser::phaseWindow(int, int): Assertion `threadData[id_worker].Kvec[w].size()>0' failed.
#4
StuartKim
closed
4 years ago
0
Compilation problems / documentation
#3
cwhelan
closed
3 years ago
2
shapeit4 drops all format fields
#2
freeseek
closed
3 years ago
3
Assertion generated at shapeit4: src/phaser/phaser_algorithm.cpp:50
#1
mdkeehan
closed
3 years ago
2
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