ome ome-zarr-py issues - Githubissues

ome / ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

https://pypi.org/project/ome-zarr

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Validate ome.zarr file with the python library?

#400 constantinpape opened 1 month ago
7
Patch ZipStore for write_image and write_multiscale method using Dask arrays with storage_options

#399 snibbor opened 1 month ago
1
Remove GH actions pre-commit workflow

#398 dstansby opened 1 month ago
1
Update version of pyupgrade

#397 dstansby opened 1 month ago
1
Document return values of sample data

#396 dstansby opened 1 month ago
1
[pre-commit.ci] pre-commit autoupdate

#395 pre-commit-ci[bot] opened 1 month ago
1
[pre-commit.ci] pre-commit autoupdate

#394 pre-commit-ci[bot] closed 2 months ago
1
[pre-commit.ci] pre-commit autoupdate

#393 pre-commit-ci[bot] closed 2 months ago
0
Issue: Repeated Dask Computation When Calling `write_image` or `write_labels` with Downsampling Level > 0

#392 Karl5766 opened 2 months ago
3
Enable numpy 2 (lift pin in setup.py)

#391 psobolewskiPhD closed 2 months ago
3
Download via CLI errors without --output option

#390 govekk opened 2 months ago
0
napari 0.5 support

#389 jni closed 2 months ago
14
Write metadata using delayed that depends on writing array(s)

#388 joshua-gould closed 2 months ago
5
Drop aiohttp cap (fix #146)

#387 joshmoore opened 3 months ago
0
[pre-commit.ci] pre-commit autoupdate

#386 pre-commit-ci[bot] closed 3 months ago
0
Pin numpy<2 in setup.py

#385 will-moore closed 3 months ago
3
cap numpy to less than 2

#384 jburel closed 3 months ago
0
Zarr v3 support

#383 will-moore closed 2 weeks ago
10
[pre-commit.ci] pre-commit autoupdate

#382 pre-commit-ci[bot] closed 3 months ago
1
Drop support for Python 3.8

#381 dstansby closed 2 months ago
6
Test suite failure for commit

#380 snoopycrimecop closed 3 months ago
1
Cannot overwrite Zarr opened with `mode= "a"`

#376 chourroutm opened 4 months ago
3
Revert A005 ignore: "module is shadowing python builtin module"

#374 joshmoore opened 5 months ago
0
Update to codecov 4

#373 joshmoore closed 5 months ago
3
add #261 to changelog

#370 giovp closed 5 months ago
2
Read from public S3 URI without credentials

#369 pgarrison closed 2 months ago
0
Package-level members

#368 vreuter closed 3 months ago
2
Improve CLI docs

#367 dstansby closed 4 months ago
3
[pre-commit.ci] pre-commit autoupdate

#366 pre-commit-ci[bot] closed 4 months ago
3
Fix scalar chunking

#365 dstansby closed 4 months ago
3
write_image with scalar chunks only sets chunks of last axis

#364 dstansby closed 4 months ago
0
unable to `write_image` into a zipStore?

#363 BioinfoTongLI opened 6 months ago
1
[pre-commit.ci] pre-commit autoupdate

#361 pre-commit-ci[bot] closed 6 months ago
1
[pre-commit.ci] pre-commit autoupdate

#359 pre-commit-ci[bot] closed 6 months ago
0
Allow to change downsample function

#358 nhatnm52 closed 5 months ago
5
Reaching maximum recursion depth while loading zarr file

#357 FIrgolitsch closed 4 months ago
9
[pre-commit.ci] pre-commit autoupdate

#355 pre-commit-ci[bot] closed 7 months ago
0
Test suite failure for commit

#354 snoopycrimecop closed 7 months ago
1
Incompatibility with Poetry?

#353 akhanf opened 7 months ago
3
Test suite failure for commit

#352 snoopycrimecop opened 7 months ago
2
Support init of ome_zarr_py.io.ZarrLocation with zarr.storage.FSStore

#349 berombau closed 4 months ago
7
[pre-commit.ci] pre-commit autoupdate

#348 pre-commit-ci[bot] closed 7 months ago
1
Pyproject.toml & setuptools_scm support

#346 joshmoore opened 8 months ago
9
Reading multiscales metadata

#345 k-dominik closed 8 months ago
5
Using parse_url to create a store reads arrays with all zeros

#343 joshua-gould opened 9 months ago
10
Unpin fsspec in dev requirements

#342 dstansby closed 8 months ago
2
Test suite failure for commit

#341 snoopycrimecop closed 8 months ago
0
Test suite failure for commit

#340 snoopycrimecop closed 8 months ago
0
Cannot read coinsdata created according to document

#339 hkthirano opened 10 months ago
2
Simplify testing setup + Python 3.12 tests

#338 dstansby closed 7 months ago
0