issues
search
omerwe
/
polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
MIT License
85
stars
21
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
error with ldscore files when using polyfun --compute-h2-L2
#55
cmlakhan
closed
2 years ago
3
potential bug in compute_ldscores_from _chr function
#54
teresa-sansan
closed
3 years ago
5
AttributeError: 'DataFrame' object has no attribute 'ukb'
#53
jdblischak
closed
3 years ago
4
Ignore pycache directories
#52
jdblischak
closed
3 years ago
1
Check the effect allele of priors and sumstats
#51
shimaomao26
closed
3 years ago
1
polyfun+ finemap
#50
hchcwwwww
closed
3 years ago
1
Regularization and continuous annotations
#49
gbloeb
closed
3 years ago
1
SNP
#48
hchcwwwww
closed
3 years ago
1
MAF
#47
hchcwwwww
closed
3 years ago
1
sample size N
#46
hchcwwwww
closed
3 years ago
4
cannot specify specific annotations when using multiple annotation files
#45
cmlakhan
closed
3 years ago
7
Detect edge case of OR==0
#44
jdblischak
closed
3 years ago
1
Susie Update
#43
jerome-f
closed
3 years ago
1
padding zero for chromosome
#42
jerome-f
closed
3 years ago
6
is_indel
#41
jerome-f
closed
3 years ago
2
/tmp filled up quickly by genome wide fine mapping
#40
yyshi1
closed
3 years ago
3
ValueError: FINEMAP object does not support --allow-missing
#39
yyshi1
closed
3 years ago
3
assert len(np.unique(chr_num)) > 1 AssertionError
#38
yyshi1
closed
3 years ago
2
input format for summary statistics for munging?
#37
complexgenome
closed
3 years ago
1
PolyFun results
#36
justanewbieC
closed
3 years ago
1
ModuleNotFoundError: No module named 'compute_ldscores_ukb'
#35
JoniColeman
closed
3 years ago
2
Compute LD-scores for each SNP bin using .bcor files
#34
JoniColeman
opened
3 years ago
16
lower case alleles
#33
badoi
closed
3 years ago
2
Multi-ethnic fine-mapping method
#32
zx8754
closed
3 years ago
2
XtX is not symmetric
#31
trb8
closed
4 years ago
13
estimate the relative contribution of eQTLs to the heritability of a complex trait
#30
montenegrina
closed
4 years ago
8
susie wrapper error
#29
aselewa
closed
4 years ago
9
Error with overlap annot
#28
aselewa
closed
4 years ago
2
creating annotations
#27
aselewa
closed
4 years ago
2
how to convert ref ldsc to polyfun ref
#26
bnj50
closed
4 years ago
7
compute_ldscores.py: line 200 TypeError: can't multiply sequence by non-int of type 'float'
#25
dwightman
closed
4 years ago
2
pyarrow
#24
bschilder
closed
4 years ago
2
Calculating _M files to accompany .l2.ldscore files
#23
davidaknowles
closed
4 years ago
2
`compression = None` on line 193 of parse.py
#22
davidaknowles
closed
4 years ago
3
Handling case-control sum stats
#21
davidaknowles
closed
4 years ago
4
Add print-coefficient flag
#20
quattro
closed
4 years ago
3
Error after executing test run
#19
tkamath1
closed
4 years ago
8
susieR update
#18
bschilder
closed
4 years ago
8
LD directly from alkesgroup server
#17
bschilder
closed
4 years ago
7
Enrichment .results file
#16
bschilder
closed
4 years ago
18
missing SNPs
#15
bschilder
closed
4 years ago
9
plink reference files
#14
bschilder
closed
4 years ago
3
load_ld() - feature request
#13
bschilder
closed
4 years ago
3
Per Locus
#12
bschilder
closed
4 years ago
2
More munging
#11
bschilder
closed
4 years ago
2
MAF munging
#10
bschilder
opened
4 years ago
5
Handling missing SNPs (polyfun.py)
#9
bschilder
closed
4 years ago
1
Column renaming
#8
bschilder
closed
4 years ago
1
Column merging
#7
bschilder
closed
4 years ago
1
Handling missing SNPs (extract_snpvar.py)
#6
bschilder
closed
4 years ago
2
Previous
Next