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ontologyportal / sigmanlp

NLP functionality on top of the Sigma system
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Compile errors #9

Open manisabri opened 4 years ago

manisabri commented 4 years ago

Hi, Running ant results in following errors:

compile:
    [mkdir] Created dir: /home/mani/workspace/sigmanlp/build/classes
    [javac] /home/mani/workspace/sigmanlp/build.xml:49: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
    [javac] Compiling 174 source files to /home/mani/workspace/sigmanlp/build/classes
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/corpora/LogicLevel.java:7: error: package com.sun.org.apache.bcel.internal.classfile is not visible
    [javac] import com.sun.org.apache.bcel.internal.classfile.LineNumber;
    [javac]                                        ^
    [javac]   (package com.sun.org.apache.bcel.internal.classfile is declared in module java.xml, which does not export it)
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/DependencyConverter.java:652: warning: [deprecation] CollapsedCCProcessedDependenciesAnnotation in SemanticGraphCoreAnnotations has been deprecated
    [javac]                 SemanticGraph dependencies = sentence.get(CollapsedCCProcessedDependenciesAnnotation.class);
    [javac]                                                           ^
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/semRewrite/datesandnumber/StanfordDateTimeExtractor.java:102: warning: [deprecation] CollapsedDependenciesAnnotation in SemanticGraphCoreAnnotations has been deprecated
    [javac]         dependencies = (sentence.get(CollapsedDependenciesAnnotation.class));
    [javac]                                      ^
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/TermCloud.java:75: warning: [deprecation] Integer(int) in Integer has been deprecated
    [javac]             Integer freq = new Integer(1);
    [javac]                            ^
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/TermCloud.java:89: warning: [deprecation] Integer(int) in Integer has been deprecated
    [javac]                 freq = new Integer(0);
    [javac]                        ^
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/corpora/CoNLL04.java:97: warning: [deprecation] Integer(int) in Integer has been deprecated
    [javac]                 else return (new Integer(second)).compareTo(r.second);
    [javac]                              ^
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/corpora/CoNLL04.java:99: warning: [deprecation] Integer(int) in Integer has been deprecated
    [javac]             else return (new Integer(first)).compareTo(r.first);
    [javac]                          ^
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/pipeline/SentenceUtil.java:95: warning: [deprecation] CollapsedCCProcessedDependenciesAnnotation in SemanticGraphCoreAnnotations has been deprecated
    [javac]             SemanticGraph dependencies = sentence.get(CollapsedCCProcessedDependenciesAnnotation.class);
    [javac]                                                       ^
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/pipeline/SentenceUtil.java:331: warning: [deprecation] CollapsedCCProcessedDependenciesAnnotation in SemanticGraphCoreAnnotations has been deprecated
    [javac]         SemanticGraph dependencies = sentence.get(CollapsedCCProcessedDependenciesAnnotation.class);
    [javac]                                                   ^
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/pipeline/SentenceUtil.java:377: warning: [deprecation] CollapsedCCProcessedDependenciesAnnotation in SemanticGraphCoreAnnotations has been deprecated
    [javac]         SemanticGraph dependencies = sentence.get(CollapsedCCProcessedDependenciesAnnotation.class);
    [javac]                                                   ^
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/corpora/VerbNet/Frame.java:121: error: cannot find symbol
    [javac]                         t.restrict.addAll(Verb.readSelrestrs(element2));
    [javac]                                           ^
    [javac]   symbol:   variable Verb
    [javac]   location: class Frame
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/corpora/VerbNet/Frame.java:135: error: cannot find symbol
    [javac]                         t.restrict.addAll(Verb.readSelrestrs(element2));
    [javac]                                           ^
    [javac]   symbol:   variable Verb
    [javac]   location: class Frame
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/corpora/VerbNet/Frame.java:149: error: cannot find symbol
    [javac]                         t.restrict.addAll(Verb.readSelrestrs(element2));
    [javac]                                           ^
    [javac]   symbol:   variable Verb
    [javac]   location: class Frame
    [javac] /home/mani/workspace/sigmanlp/src/main/java/com/articulate/nlp/corpora/VerbNet/VerbNetCorpus.java:22: error: incompatible types: com.articulate.sigma.VerbNet.Frame cannot be converted to com.articulate.nlp.corpora.VerbNet.Frame
    [javac]                 for (Frame f : v.frames) {
    [javac]                                 ^
    [javac] /home/mani/workspace/sigmanlp/src/test/unit/java/com/articulate/nlp/semRewrite/SemRewriteToFormulaTest.java:48: warning: [deprecation] logicallyEquals(String) in Formula has been deprecated
    [javac]         assertTrue(actualFormula.logicallyEquals(expectedOutput));
    [javac]                                 ^
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [javac] 5 errors
    [javac] 10 warnings

BUILD FAILED
/home/mani/workspace/sigmanlp/build.xml:49: Compile failed; see the compiler error output for details.
apease commented 4 years ago

It looks like I missed pushing a few corrections. I've done a new push. Please pull and try again

manisabri commented 4 years ago

Going to http://localhost:8080/sigmanlp/NLP.jsp will give you this error

HTTP Status 500 – Internal Server Error

Type Exception Report

Message edu.stanford.nlp.util.ReflectionLoading$ReflectionLoadingException: Error creating edu.stanford.nlp.time.TimeExpressionExtractorImpl

Description The server encountered an unexpected condition that prevented it from fulfilling the request.

Exception

org.apache.jasper.JasperException: edu.stanford.nlp.util.ReflectionLoading$ReflectionLoadingException: Error creating edu.stanford.nlp.time.TimeExpressionExtractorImpl
    org.apache.jasper.servlet.JspServletWrapper.handleJspException(JspServletWrapper.java:565)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:481)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

edu.stanford.nlp.util.ReflectionLoading$ReflectionLoadingException: Error creating edu.stanford.nlp.time.TimeExpressionExtractorImpl
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:38)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:138)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:131)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$45(StanfordCoreNLP.java:546)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$70(StanfordCoreNLP.java:625)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.construct(StanfordCoreNLP.java:495)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:201)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:181)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

edu.stanford.nlp.util.MetaClass$ClassCreationException: MetaClass couldn't create public edu.stanford.nlp.time.TimeExpressionExtractorImpl(java.lang.String,java.util.Properties) with args [sutime, {}]
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:237)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:138)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:131)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$45(StanfordCoreNLP.java:546)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$70(StanfordCoreNLP.java:625)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.construct(StanfordCoreNLP.java:495)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:201)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:181)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.lang.reflect.InvocationTargetException
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:138)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:131)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$45(StanfordCoreNLP.java:546)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$70(StanfordCoreNLP.java:625)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.construct(StanfordCoreNLP.java:495)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:201)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:181)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.lang.RuntimeException: Error initializing binder 1
    edu.stanford.nlp.time.Options.<init>(Options.java:121)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.init(TimeExpressionExtractorImpl.java:44)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.<init>(TimeExpressionExtractorImpl.java:39)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:138)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:131)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$45(StanfordCoreNLP.java:546)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$70(StanfordCoreNLP.java:625)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.construct(StanfordCoreNLP.java:495)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:201)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:181)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.lang.IllegalStateException: Cannot instantiate configuration.
    de.jollyday.datasource.impl.XmlFileDataSource.getConfiguration(XmlFileDataSource.java:39)
    de.jollyday.impl.DefaultHolidayManager.doInit(DefaultHolidayManager.java:239)
    de.jollyday.HolidayManager.init(HolidayManager.java:319)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:44)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:13)
    de.jollyday.util.Cache.get(Cache.java:51)
    de.jollyday.HolidayManager.createManager(HolidayManager.java:168)
    de.jollyday.HolidayManager.getInstance(HolidayManager.java:148)
    edu.stanford.nlp.time.JollyDayHolidays.init(JollyDayHolidays.java:57)
    edu.stanford.nlp.time.Options.<init>(Options.java:119)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.init(TimeExpressionExtractorImpl.java:44)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.<init>(TimeExpressionExtractorImpl.java:39)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:138)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:131)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$45(StanfordCoreNLP.java:546)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$70(StanfordCoreNLP.java:625)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.construct(StanfordCoreNLP.java:495)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:201)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:181)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.lang.IllegalStateException: Cannot parse holidays XML file.
    de.jollyday.util.XMLUtil.unmarshallConfiguration(XMLUtil.java:78)
    de.jollyday.datasource.impl.XmlFileDataSource.getConfiguration(XmlFileDataSource.java:37)
    de.jollyday.impl.DefaultHolidayManager.doInit(DefaultHolidayManager.java:239)
    de.jollyday.HolidayManager.init(HolidayManager.java:319)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:44)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:13)
    de.jollyday.util.Cache.get(Cache.java:51)
    de.jollyday.HolidayManager.createManager(HolidayManager.java:168)
    de.jollyday.HolidayManager.getInstance(HolidayManager.java:148)
    edu.stanford.nlp.time.JollyDayHolidays.init(JollyDayHolidays.java:57)
    edu.stanford.nlp.time.Options.<init>(Options.java:119)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.init(TimeExpressionExtractorImpl.java:44)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.<init>(TimeExpressionExtractorImpl.java:39)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:138)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:131)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$45(StanfordCoreNLP.java:546)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$70(StanfordCoreNLP.java:625)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.construct(StanfordCoreNLP.java:495)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:201)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:181)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

javax.xml.bind.JAXBException: Provider com.sun.xml.internal.bind.v2.ContextFactory not found
 - with linked exception:
[java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
    javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:148)
    javax.xml.bind.ContextFinder.find(ContextFinder.java:361)
    javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:446)
    javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:409)
    de.jollyday.util.XMLUtil$JAXBContextCreator.create(XMLUtil.java:170)
    de.jollyday.util.XMLUtil.unmarshallConfiguration(XMLUtil.java:71)
    de.jollyday.datasource.impl.XmlFileDataSource.getConfiguration(XmlFileDataSource.java:37)
    de.jollyday.impl.DefaultHolidayManager.doInit(DefaultHolidayManager.java:239)
    de.jollyday.HolidayManager.init(HolidayManager.java:319)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:44)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:13)
    de.jollyday.util.Cache.get(Cache.java:51)
    de.jollyday.HolidayManager.createManager(HolidayManager.java:168)
    de.jollyday.HolidayManager.getInstance(HolidayManager.java:148)
    edu.stanford.nlp.time.JollyDayHolidays.init(JollyDayHolidays.java:57)
    edu.stanford.nlp.time.Options.<init>(Options.java:119)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.init(TimeExpressionExtractorImpl.java:44)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.<init>(TimeExpressionExtractorImpl.java:39)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:138)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:131)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$45(StanfordCoreNLP.java:546)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$70(StanfordCoreNLP.java:625)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.construct(StanfordCoreNLP.java:495)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:201)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:181)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
    org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1291)
    org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1119)
    javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:573)
    javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:145)
    javax.xml.bind.ContextFinder.find(ContextFinder.java:361)
    javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:446)
    javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:409)
    de.jollyday.util.XMLUtil$JAXBContextCreator.create(XMLUtil.java:170)
    de.jollyday.util.XMLUtil.unmarshallConfiguration(XMLUtil.java:71)
    de.jollyday.datasource.impl.XmlFileDataSource.getConfiguration(XmlFileDataSource.java:37)
    de.jollyday.impl.DefaultHolidayManager.doInit(DefaultHolidayManager.java:239)
    de.jollyday.HolidayManager.init(HolidayManager.java:319)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:44)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:13)
    de.jollyday.util.Cache.get(Cache.java:51)
    de.jollyday.HolidayManager.createManager(HolidayManager.java:168)
    de.jollyday.HolidayManager.getInstance(HolidayManager.java:148)
    edu.stanford.nlp.time.JollyDayHolidays.init(JollyDayHolidays.java:57)
    edu.stanford.nlp.time.Options.<init>(Options.java:119)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.init(TimeExpressionExtractorImpl.java:44)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.<init>(TimeExpressionExtractorImpl.java:39)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:138)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:131)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$45(StanfordCoreNLP.java:546)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$70(StanfordCoreNLP.java:625)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.construct(StanfordCoreNLP.java:495)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:201)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:181)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Note The full stack trace of the root cause is available in the server logs.
Apache Tomcat/8.5.23
apease commented 4 years ago

hmm, it's running for me locally. What version of CoreNLP are you running? Please post the directly listing of your sigmanlp/lib directory

apease commented 4 years ago

directly->directory

manisabri commented 4 years ago

Looks like this:

$ll /home/mani/workspace/sigmanlp/lib
total 380208
drwxrwxr-x  2 mani mani      4096 Aug  8 19:02 ./
drwxrwxr-x 11 mani mani      4096 Aug  8 19:02 ../
-rwxrwxr-x  1 mani mani     62983 Jun 15 00:08 activation-1.1.jar*
-rwxrwxr-x  1 mani mani    233859 Jun 15 00:08 commons-beanutils-1.9.2.jar*
-rwxrwxr-x  1 mani mani    263965 Jun 15 00:08 commons-codec-1.9.jar*
-rwxrwxr-x  1 mani mani    575389 Jun 15 00:08 commons-collections-3.2.1.jar*
-rwxrwxr-x  1 mani mani    208700 Jun 15 00:08 commons-io-2.5.jar*
-rwxrwxr-x  1 mani mani    479881 Jun 15 00:08 commons-lang3-3.5.jar*
-rwxrwxr-x  1 mani mani     60686 Jun 15 00:08 commons-logging-1.1.1.jar*
-rwxrwxr-x  1 mani mani    301506 Jun 15 00:08 ejml-0.23.jar*
-rwxrwxr-x  1 mani mani   2308517 Jun 15 00:08 guava-19.0.jar*
-rw-rw-r--  1 mani mani   1821940 Jun 15 00:08 h2-1.4.196.jar
-rw-rw-r--  1 mani mani     45024 Jun 15 00:08 hamcrest-core-1.3.jar
-rwxrwxr-x  1 mani mani    564672 Jun 15 00:08 ion-java-1.0.1.jar*
-rwxrwxr-x  1 mani mani     46968 Jun 15 00:08 jackson-annotations-2.6.0.jar*
-rwxrwxr-x  1 mani mani    258917 Jun 15 00:08 jackson-core-2.6.6.jar*
-rwxrwxr-x  1 mani mani   1170626 Jun 15 00:08 jackson-databind-2.6.6.jar*
-rwxrwxr-x  1 mani mani     48468 Jun 15 00:08 jackson-dataformat-cbor-2.6.6.jar*
-rwxrwxr-x  1 mani mani     85353 Jun 15 00:08 javax.servlet-api-3.0.1.jar*
-rwxrwxr-x  1 mani mani    100146 Jun 15 00:08 jaxb-api-2.2.7.jar*
-rw-rw-r--  1 mani mani    629506 Jun 15 00:08 joda-time.jar
-rw-rw-r--  1 mani mani    213591 Jun 15 00:08 jollyday.jar
-rwxrwxr-x  1 mani mani     23931 Jun 15 00:08 json-simple-1.1.1.jar*
-rw-rw-r--  1 mani mani    314932 Jun 15 00:08 junit-4.12.jar
-rw-rw-r--  1 mani mani   1513865 Jun 15 00:08 lucene-analyzers-common-6.5.1.jar
-rw-rw-r--  1 mani mani   2776125 Jun 15 00:08 lucene-core-6.5.1.jar
-rw-rw-r--  1 mani mani    404762 Jun 15 00:08 lucene-queryparser-6.5.1.jar
-rwxrwxr-x  1 mani mani    521157 Jun 15 00:08 mail-1.4.7.jar*
-rwxrwxr-x  1 mani mani     64417 Jun 15 00:08 opencsv-3.8.jar*
-rwxrwxr-x  1 mani mani    596642 Jun 15 00:08 protobuf-java-2.6.1.jar*
-rw-rw-r--  1 mani mani   1188977 Aug  8 19:45 sigmakee.jar
-rwxrwxr-x  1 mani mani     32127 Jun 15 00:08 slf4j-api-1.7.12.jar*
-rw-rw-r--  1 mani mani   8060812 Aug  8 18:59 stanford-corenlp-3.9.0.jar
-rw-rw-r--  1 mani mani 362570962 Aug  8 18:59 stanford-corenlp-3.9.0-models.jar
-rwxrwxr-x  1 mani mani   1207073 Jun 15 00:08 xercesImpl-2.8.0.jar*
-rwxrwxr-x  1 mani mani    195119 Jun 15 00:08 xml-apis-1.3.03.jar*
-rwxrwxr-x  1 mani mani    313253 Jun 15 00:08 xom-1.2.10.jar*
apease commented 4 years ago

it looks like I'm running CoreNLP 3.9.2 locally. Could you try downloading

stanford-corenlp-3.9.2.jar stanford-corenlp-3.9.2-models.jar

and putting them in the lib directory? If that makes a difference, I'll update the sigmanlp readme

manisabri commented 4 years ago

I changed the corenlp libs but got these errors which I saw twice before changing them too

Type Exception Report

Message An exception occurred processing JSP page [/NLP.jsp] at line [39]

Description The server encountered an unexpected condition that prevented it from fulfilling the request.

Exception

org.apache.jasper.JasperException: An exception occurred processing JSP page [/NLP.jsp] at line [39]

36:         return;
37:     }
38:     KBmanager.getMgr().initializeOnce();
39:     TimeBank.init();
40:     Interpreter interp = new Interpreter();
41:     interp.initialize();
42: 

Stacktrace:
    org.apache.jasper.servlet.JspServletWrapper.handleJspException(JspServletWrapper.java:588)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:481)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

edu.stanford.nlp.io.RuntimeIOException: Error while loading a tagger model (probably missing model file)
    edu.stanford.nlp.tagger.maxent.MaxentTagger.readModelAndInit(MaxentTagger.java:801)
    edu.stanford.nlp.tagger.maxent.MaxentTagger.<init>(MaxentTagger.java:322)
    edu.stanford.nlp.tagger.maxent.MaxentTagger.<init>(MaxentTagger.java:275)
    edu.stanford.nlp.pipeline.POSTaggerAnnotator.loadModel(POSTaggerAnnotator.java:85)
    edu.stanford.nlp.pipeline.POSTaggerAnnotator.<init>(POSTaggerAnnotator.java:73)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.posTagger(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$5(StanfordCoreNLP.java:527)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$32(StanfordCoreNLP.java:608)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:253)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:190)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.io.IOException: Unable to open "edu/stanford/nlp/models/pos-tagger/english-left3words-distsim.tagger" as class path, filename or URL
    edu.stanford.nlp.io.IOUtils.getInputStreamFromURLOrClasspathOrFileSystem(IOUtils.java:482)
    edu.stanford.nlp.tagger.maxent.MaxentTagger.readModelAndInit(MaxentTagger.java:798)
    edu.stanford.nlp.tagger.maxent.MaxentTagger.<init>(MaxentTagger.java:322)
    edu.stanford.nlp.tagger.maxent.MaxentTagger.<init>(MaxentTagger.java:275)
    edu.stanford.nlp.pipeline.POSTaggerAnnotator.loadModel(POSTaggerAnnotator.java:85)
    edu.stanford.nlp.pipeline.POSTaggerAnnotator.<init>(POSTaggerAnnotator.java:73)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.posTagger(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$5(StanfordCoreNLP.java:527)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$32(StanfordCoreNLP.java:608)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:253)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:190)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Note The full stack trace of the root cause is available in the server logs.
apease commented 4 years ago

just to confirm, did you delete the old corenlp and model files? Maybe also double check the permission on those two files? When I open the 3.9.2 models file I see

apease@apease-ThinkPad-T460s:~/workspace/sigmanlp/lib$ jar -tf stanford-corenlp-3.9.2-models.jar | grep english-left3words edu/stanford/nlp/models/pos-tagger/english-left3words/ edu/stanford/nlp/models/pos-tagger/english-left3words/english-left3words-distsim.tagger.props edu/stanford/nlp/models/pos-tagger/english-left3words/english-left3words-distsim.tagger

manisabri commented 4 years ago

I see the same thing with jar

last stacktrace was with coreNlp 4.1. I downloaded 3.9.2 and I get the same error on the same line but with different stacktrace

HTTP Status 500 – Internal Server Error

Type Exception Report

Message An exception occurred processing JSP page [/NLP.jsp] at line [39]

Description The server encountered an unexpected condition that prevented it from fulfilling the request.

Exception

org.apache.jasper.JasperException: An exception occurred processing JSP page [/NLP.jsp] at line [39]

36:         return;
37:     }
38:     KBmanager.getMgr().initializeOnce();
39:     TimeBank.init();
40:     Interpreter interp = new Interpreter();
41:     interp.initialize();
42: 

Stacktrace:
    org.apache.jasper.servlet.JspServletWrapper.handleJspException(JspServletWrapper.java:588)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:481)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

edu.stanford.nlp.util.ReflectionLoading$ReflectionLoadingException: Error creating edu.stanford.nlp.time.TimeExpressionExtractorImpl
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:38)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:116)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:125)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$5(StanfordCoreNLP.java:523)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$30(StanfordCoreNLP.java:602)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:251)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:192)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:188)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

edu.stanford.nlp.util.MetaClass$ClassCreationException: MetaClass couldn't create public edu.stanford.nlp.time.TimeExpressionExtractorImpl(java.lang.String,java.util.Properties) with args [sutime, {}]
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:237)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:116)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:125)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$5(StanfordCoreNLP.java:523)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$30(StanfordCoreNLP.java:602)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:251)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:192)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:188)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.lang.reflect.InvocationTargetException
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:116)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:125)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$5(StanfordCoreNLP.java:523)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$30(StanfordCoreNLP.java:602)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:251)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:192)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:188)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.lang.RuntimeException: Error initializing binder 1
    edu.stanford.nlp.time.Options.<init>(Options.java:121)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.init(TimeExpressionExtractorImpl.java:44)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.<init>(TimeExpressionExtractorImpl.java:39)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:116)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:125)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$5(StanfordCoreNLP.java:523)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$30(StanfordCoreNLP.java:602)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:251)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:192)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:188)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.lang.IllegalStateException: Cannot instantiate configuration.
    de.jollyday.datasource.impl.XmlFileDataSource.getConfiguration(XmlFileDataSource.java:39)
    de.jollyday.impl.DefaultHolidayManager.doInit(DefaultHolidayManager.java:239)
    de.jollyday.HolidayManager.init(HolidayManager.java:319)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:44)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:13)
    de.jollyday.util.Cache.get(Cache.java:51)
    de.jollyday.HolidayManager.createManager(HolidayManager.java:168)
    de.jollyday.HolidayManager.getInstance(HolidayManager.java:148)
    edu.stanford.nlp.time.JollyDayHolidays.init(JollyDayHolidays.java:57)
    edu.stanford.nlp.time.Options.<init>(Options.java:119)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.init(TimeExpressionExtractorImpl.java:44)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.<init>(TimeExpressionExtractorImpl.java:39)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:116)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:125)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$5(StanfordCoreNLP.java:523)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$30(StanfordCoreNLP.java:602)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:251)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:192)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:188)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.lang.IllegalStateException: Cannot parse holidays XML file.
    de.jollyday.util.XMLUtil.unmarshallConfiguration(XMLUtil.java:78)
    de.jollyday.datasource.impl.XmlFileDataSource.getConfiguration(XmlFileDataSource.java:37)
    de.jollyday.impl.DefaultHolidayManager.doInit(DefaultHolidayManager.java:239)
    de.jollyday.HolidayManager.init(HolidayManager.java:319)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:44)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:13)
    de.jollyday.util.Cache.get(Cache.java:51)
    de.jollyday.HolidayManager.createManager(HolidayManager.java:168)
    de.jollyday.HolidayManager.getInstance(HolidayManager.java:148)
    edu.stanford.nlp.time.JollyDayHolidays.init(JollyDayHolidays.java:57)
    edu.stanford.nlp.time.Options.<init>(Options.java:119)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.init(TimeExpressionExtractorImpl.java:44)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.<init>(TimeExpressionExtractorImpl.java:39)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:116)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:125)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$5(StanfordCoreNLP.java:523)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$30(StanfordCoreNLP.java:602)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:251)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:192)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:188)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

javax.xml.bind.JAXBException: Provider com.sun.xml.internal.bind.v2.ContextFactory not found
 - with linked exception:
[java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
    javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:148)
    javax.xml.bind.ContextFinder.find(ContextFinder.java:361)
    javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:446)
    javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:409)
    de.jollyday.util.XMLUtil$JAXBContextCreator.create(XMLUtil.java:170)
    de.jollyday.util.XMLUtil.unmarshallConfiguration(XMLUtil.java:71)
    de.jollyday.datasource.impl.XmlFileDataSource.getConfiguration(XmlFileDataSource.java:37)
    de.jollyday.impl.DefaultHolidayManager.doInit(DefaultHolidayManager.java:239)
    de.jollyday.HolidayManager.init(HolidayManager.java:319)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:44)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:13)
    de.jollyday.util.Cache.get(Cache.java:51)
    de.jollyday.HolidayManager.createManager(HolidayManager.java:168)
    de.jollyday.HolidayManager.getInstance(HolidayManager.java:148)
    edu.stanford.nlp.time.JollyDayHolidays.init(JollyDayHolidays.java:57)
    edu.stanford.nlp.time.Options.<init>(Options.java:119)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.init(TimeExpressionExtractorImpl.java:44)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.<init>(TimeExpressionExtractorImpl.java:39)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:116)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:125)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$5(StanfordCoreNLP.java:523)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$30(StanfordCoreNLP.java:602)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:251)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:192)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:188)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
    org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1291)
    org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1119)
    javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:573)
    javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:145)
    javax.xml.bind.ContextFinder.find(ContextFinder.java:361)
    javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:446)
    javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:409)
    de.jollyday.util.XMLUtil$JAXBContextCreator.create(XMLUtil.java:170)
    de.jollyday.util.XMLUtil.unmarshallConfiguration(XMLUtil.java:71)
    de.jollyday.datasource.impl.XmlFileDataSource.getConfiguration(XmlFileDataSource.java:37)
    de.jollyday.impl.DefaultHolidayManager.doInit(DefaultHolidayManager.java:239)
    de.jollyday.HolidayManager.init(HolidayManager.java:319)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:44)
    de.jollyday.caching.HolidayManagerValueHandler.createValue(HolidayManagerValueHandler.java:13)
    de.jollyday.util.Cache.get(Cache.java:51)
    de.jollyday.HolidayManager.createManager(HolidayManager.java:168)
    de.jollyday.HolidayManager.getInstance(HolidayManager.java:148)
    edu.stanford.nlp.time.JollyDayHolidays.init(JollyDayHolidays.java:57)
    edu.stanford.nlp.time.Options.<init>(Options.java:119)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.init(TimeExpressionExtractorImpl.java:44)
    edu.stanford.nlp.time.TimeExpressionExtractorImpl.<init>(TimeExpressionExtractorImpl.java:39)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
    edu.stanford.nlp.util.MetaClass$ClassFactory.createInstance(MetaClass.java:233)
    edu.stanford.nlp.util.MetaClass.createInstance(MetaClass.java:382)
    edu.stanford.nlp.util.ReflectionLoading.loadByReflection(ReflectionLoading.java:36)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.create(TimeExpressionExtractorFactory.java:60)
    edu.stanford.nlp.time.TimeExpressionExtractorFactory.createExtractor(TimeExpressionExtractorFactory.java:43)
    edu.stanford.nlp.ie.regexp.NumberSequenceClassifier.<init>(NumberSequenceClassifier.java:86)
    edu.stanford.nlp.ie.NERClassifierCombiner.<init>(NERClassifierCombiner.java:116)
    edu.stanford.nlp.pipeline.NERCombinerAnnotator.<init>(NERCombinerAnnotator.java:125)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.ner(AnnotatorImplementations.java:68)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$5(StanfordCoreNLP.java:523)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$30(StanfordCoreNLP.java:602)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:251)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:192)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:188)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.corpora.TimeBank.init(TimeBank.java:70)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:277)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Note The full stack trace of the root cause is available in the server logs.
Apache Tomcat/8.5.23
apease commented 4 years ago

Maybe your old CoreNLP is still in the build/lib directory? try deleting them if so

manisabri commented 4 years ago

What version of java are you using? It seems that CoreNLP works with java 8 but I installed sigmakee with java 14

apease commented 4 years ago

I'm running java 8 since I think that's required for CoreNLP

apease commented 4 years ago

for the most recent error I believe it's caused by use of the '~' in paths, which Java seems to have trouble with. Please use fully spelled out paths in your .bashrc and config.xml

manisabri commented 4 years ago

yeah, changed to java 8 and changed the path but still no joy

HTTP Status 500 – Internal Server Error

Type Exception Report

Message An exception occurred processing JSP page [/NLP.jsp] at line [40]

Description The server encountered an unexpected condition that prevented it from fulfilling the request.

Exception

org.apache.jasper.JasperException: An exception occurred processing JSP page [/NLP.jsp] at line [40]

37:     }
38:     KBmanager.getMgr().initializeOnce();
39:     TimeBank.init();
40:     Interpreter interp = new Interpreter();
41:     interp.initialize();
42: 
43:     //String filename = System.getProperty("user.home") + "/workspace/sumo/WordNetMappings" + File.separator + "Relations.txt";

Stacktrace:
    org.apache.jasper.servlet.JspServletWrapper.handleJspException(JspServletWrapper.java:588)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:481)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

edu.stanford.nlp.io.RuntimeIOException: java.io.IOException: Unable to open "/home/mani/Programs/stanford-corenlp-full-2018-01-31" as class path, filename or URL
    edu.stanford.nlp.parser.common.ParserGrammar.loadModel(ParserGrammar.java:187)
    edu.stanford.nlp.pipeline.ParserAnnotator.loadModel(ParserAnnotator.java:219)
    edu.stanford.nlp.pipeline.ParserAnnotator.<init>(ParserAnnotator.java:121)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.parse(AnnotatorImplementations.java:113)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$51(StanfordCoreNLP.java:552)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$70(StanfordCoreNLP.java:625)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.construct(StanfordCoreNLP.java:495)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:201)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:181)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.semRewrite.Interpreter.<init>(Interpreter.java:141)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:278)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Root Cause

java.io.IOException: Unable to open "/home/mani/Programs/stanford-corenlp-full-2018-01-31" as class path, filename or URL
    edu.stanford.nlp.io.IOUtils.getInputStreamFromURLOrClasspathOrFileSystem(IOUtils.java:481)
    edu.stanford.nlp.io.IOUtils.readObjectFromURLOrClasspathOrFileSystem(IOUtils.java:310)
    edu.stanford.nlp.parser.common.ParserGrammar.loadModel(ParserGrammar.java:184)
    edu.stanford.nlp.pipeline.ParserAnnotator.loadModel(ParserAnnotator.java:219)
    edu.stanford.nlp.pipeline.ParserAnnotator.<init>(ParserAnnotator.java:121)
    edu.stanford.nlp.pipeline.AnnotatorImplementations.parse(AnnotatorImplementations.java:113)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$getNamedAnnotators$51(StanfordCoreNLP.java:552)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.lambda$null$70(StanfordCoreNLP.java:625)
    edu.stanford.nlp.util.Lazy$3.compute(Lazy.java:126)
    edu.stanford.nlp.util.Lazy.get(Lazy.java:31)
    edu.stanford.nlp.pipeline.AnnotatorPool.get(AnnotatorPool.java:149)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.construct(StanfordCoreNLP.java:495)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:201)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:194)
    edu.stanford.nlp.pipeline.StanfordCoreNLP.<init>(StanfordCoreNLP.java:181)
    com.articulate.nlp.pipeline.Pipeline.<init>(Pipeline.java:120)
    com.articulate.nlp.semRewrite.Interpreter.<init>(Interpreter.java:141)
    org.apache.jsp.NLP_jsp._jspService(NLP_jsp.java:278)
    org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:443)
    org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:385)
    org.apache.jasper.servlet.JspServlet.service(JspServlet.java:329)
    javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

Note The full stack trace of the root cause is available in the server logs.
apease commented 4 years ago

Please forgive my questioning the obvious, but I take it that you do have the directory /home/mani/Programs/stanford-corenlp-full-2018-01-31 ? If so, then I'm running out of ideas I'm afraid

manisabri commented 4 years ago

yeah it's there, I'm out of ideas too... I'll let you know what was the problem if/when I managed to make it work

apease commented 4 years ago

The only other thing I can think of would be a permissions issue with that directory

apease commented 4 years ago

could you do

ls -la /home/mani/Programs/stanford-corenlp-full-2018-01-31

and

ls -la /home/mani/Programs

and post the results, just in case I might notice anything?

manisabri commented 4 years ago

They have all the permissions I think

$ls -la /home/mani/Programs/stanford-corenlp-full-2018-01-31
total 845428
drwxrwxrwx  7 mani mani      4096 Aug  9 15:03 .
drwxrwxr-x 13 mani mani      4096 Aug  9 12:41 ..
-rwxrwxrwx  1 mani mani      3992 Feb 12  2018 build.xml
-rwxrwxrwx  1 mani mani       871 Feb 12  2018 corenlp.sh
-rwxrwxrwx  1 mani mani      5477 Feb 12  2018 CoreNLP-to-HTML.xsl
drwxrwxrwx  3 mani mani      4096 Jan 16  2018 edu
-rwxrwxrwx  1 mani mani    211938 Feb 12  2018 ejml-0.23.jar
-rwxrwxrwx  1 mani mani   1227451 Feb 12  2018 ejml-0.23-src.zip
-rwxrwxrwx  1 mani mani        89 Feb 12  2018 input.txt
-rwxrwxrwx  1 mani mani     19868 Feb 12  2018 input.txt.xml
-rwxrwxrwx  1 mani mani     54860 Feb 12  2018 javax.json-api-1.0-sources.jar
-rwxrwxrwx  1 mani mani     85147 Feb 12  2018 javax.json.jar
-rwxrwxrwx  1 mani mani    774317 Feb 12  2018 joda-time-2.9-sources.jar
-rwxrwxrwx  1 mani mani    629506 Feb 12  2018 joda-time.jar
-rwxrwxrwx  1 mani mani    196945 Feb 12  2018 jollyday-0.4.9-sources.jar
-rwxrwxrwx  1 mani mani    213591 Feb 12  2018 jollyday.jar
-rwxrwxrwx  1 mani mani      1667 Feb 12  2018 LIBRARY-LICENSES
-rwxrwxrwx  1 mani mani     35147 Feb 12  2018 LICENSE.txt
-rwxrwxrwx  1 mani mani       769 Feb 12  2018 Makefile
drwxrwxrwx  2 mani mani      4096 Jan 16  2018 META-INF
drwxrwxrwx  2 mani mani      4096 Feb 12  2018 patterns
-rwxrwxrwx  1 mani mani      5479 Feb 12  2018 pom.xml
-rwxrwxrwx  1 mani mani   1347123 Feb 12  2018 protobuf.jar
-rwxrwxrwx  1 mani mani      3909 Feb 12  2018 README.txt
-rwxrwxrwx  1 mani mani       367 Feb 12  2018 RESOURCE-LICENSES
-rwxrwxrwx  1 mani mani      2389 Feb 12  2018 SemgrexDemo.java
-rwxrwxrwx  1 mani mani      1828 Feb 12  2018 ShiftReduceDemo.java
-rwxrwxrwx  1 mani mani     32127 Feb 12  2018 slf4j-api.jar
-rwxrwxrwx  1 mani mani     10712 Feb 12  2018 slf4j-simple.jar
-rwxrwxrwx  1 mani mani   8060812 Feb 12  2018 stanford-corenlp-3.9.0.jar
-rwxrwxrwx  1 mani mani   9657478 Feb 12  2018 stanford-corenlp-3.9.0-javadoc.jar
-rwxrwxrwx  1 mani mani 362570962 Feb 12  2018 stanford-corenlp-3.9.0-models.jar
-rwxrwxrwx  1 mani mani   5272671 Feb 12  2018 stanford-corenlp-3.9.0-sources.jar
-rwxrwxrwx  1 mani mani      5798 Feb 12  2018 StanfordCoreNlpDemo.java
-rwxrwxrwx  1 mani mani    199767 Feb 12  2018 StanfordDependenciesManual.pdf
-rwxrwxrwx  1 mani mani 474000704 Aug  9 15:02 stanford-english-kbp-corenlp-2018-01-31-models.jar
drwxrwxrwx  2 mani mani      4096 Feb 12  2018 sutime
drwxrwxrwx  2 mani mani      4096 Feb 12  2018 tokensregex
-rwxrwxrwx  1 mani mani    672122 Feb 12  2018 xom-1.2.10-src.jar
-rwxrwxrwx  1 mani mani    313253 Feb 12  2018 xom.jar
$ls -la /home/mani/Programs
total 52
drwxrwxr-x  13 mani mani 4096 Aug  9 12:41 .
drwxr-xr-x 107 mani mani 4096 Aug  8 18:52 ..
drwxr-xr-x   9 mani mani 4096 Jun 15 19:26 apache-tomcat-8.5.23
drwxrwxr-x  24 mani mani 4096 Jun 18 17:49 E
drwxr-xr-x   9 mani mani 4096 Jul 15 10:08 jdk-11.0.8+10
drwxrwxr-x   9 mani mani 4096 Jun 15 19:11 jdk-14.0.1
drwxr-xr-x   8 mani mani 4096 Jul 28 16:21 jdk8u265-b01
drwxrwxr-x   8 mani mani 4096 Jun 15 16:35 leo
drwxrwxr-x   7 mani mani 4096 Aug  9 14:18 stanford-corenlp-4.1.0
drwxrwxrwx   7 mani mani 4096 Aug  9 15:03 stanford-corenlp-full-2018-01-31
drwxrwxr-x   8 mani mani 4096 Jun 15 18:49 TPTP-v7.3.0
drwxrwxr-x  25 mani mani 4096 Jun 15 15:08 vampire
drwxrwxrwx   7 mani mani 4096 Jun 15 20:11 WordNet-3.0
apease commented 4 years ago

yup, all looks good, sigh

apease commented 4 years ago

oh, maybe a strange memory issue? Have you run top while initializing? CoreNLP takes lots of memory

apease commented 4 years ago

These errors seem to be largely unrelated to Sigma itself. Can you try to run just CoreNLP alone to test? Maybe

java -cp "*" edu.stanford.nlp.pipeline.StanfordCoreNLP -file input.txt

manisabri commented 4 years ago

Actually I'm not able to do that !

manisabri commented 4 years ago

Fixed the class path but now I get out of memory error ... How much ram do you have? I'm running with -Xms6G -Xmx16G

(I got the the out of memory error once actually the rest of the times the error is still as before) (java -cp "*" edu.stanford.nlp.pipeline.StanfordCoreNLP -file input.txt works too)

apease commented 4 years ago

That should be enough memory. I run on a laptop that has 20 gig memory. Maybe try just loading Merge.kif in your config.xml to make sure it's not the knowledge base size that's the issue