issues
search
open2c
/
bioframe
Genomic interval operations on Pandas DataFrames
MIT License
173
stars
28
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
add pybigtool engine to to_bigwig
#220
golobor
opened
1 month ago
0
Bioframe.overlap RAM error
#219
talipzengin
opened
2 months ago
1
Add several sp-repo-review checks
#218
nvictus
closed
3 months ago
0
Bump to v0.7.2
#217
nvictus
closed
3 months ago
0
Prevent `read_alignments` tests on big-endian arch
#216
nvictus
closed
3 months ago
0
Two tests segfault on s390x
#215
penguinpee
closed
3 months ago
3
Typo in the changelog
#214
penguinpee
closed
3 months ago
0
build(deps): update numpy requirement from <2,>=1.10 to >=1.10,<3
#213
dependabot[bot]
opened
3 months ago
0
Merging based on unrelated intervals possible?
#212
marade
opened
3 months ago
0
[pre-commit.ci] pre-commit autoupdate
#211
pre-commit-ci[bot]
opened
4 months ago
0
Minor version bump
#210
nvictus
closed
4 months ago
0
Python 3.13: test_assembly_info fails with AttributeError
#209
penguinpee
opened
4 months ago
2
feature request
#208
WANGchuang715
opened
5 months ago
1
[pre-commit.ci] pre-commit autoupdate
#207
pre-commit-ci[bot]
closed
4 months ago
0
Fix issue in read_bam implementation, it got the wrong contig name
#206
gamazeps
closed
4 months ago
1
[pre-commit.ci] pre-commit autoupdate
#205
pre-commit-ci[bot]
closed
5 months ago
0
Refactor join arrayops and intidx internals
#204
nvictus
closed
4 months ago
0
Add to_bed as well as a few tests
#203
gamazeps
closed
5 months ago
0
[pre-commit.ci] pre-commit autoupdate
#202
pre-commit-ci[bot]
closed
5 months ago
0
Add pre-commit hooks
#201
nvictus
closed
5 months ago
1
build(deps): bump actions/checkout from 3 to 4
#200
dependabot[bot]
closed
5 months ago
0
build(deps): bump actions/setup-python from 4 to 5
#199
dependabot[bot]
closed
5 months ago
0
Add `bedtools intersect` conversions
#198
gamazeps
closed
5 months ago
2
Restore and document additional `return_input` args for `overlap`
#197
nvictus
opened
5 months ago
0
Patch bump
#196
nvictus
closed
6 months ago
0
build: Use importlib.metadata for versioning
#195
nvictus
closed
6 months ago
0
chore: Migrate from setuptools pkg_resources to importlib.resources
#194
nvictus
closed
6 months ago
0
#167: Replaced np.int with int as the attribute is deprecated by numpy
#192
harshit148
closed
6 months ago
0
fix the type error in make_chromarms
#191
milandvijay
closed
6 months ago
1
CI: Implement Issue Template for bioframe Repository
#190
milandvijay
opened
7 months ago
0
test_make_chromarms fails with TypeError using NumPy 1.24.4
#189
penguinpee
closed
6 months ago
2
default dtypes & core.construction
#188
smitkadvani
opened
7 months ago
4
Update hgdownload url in docs and assembly info
#187
nvictus
closed
8 months ago
1
Change in goldenpath URL
#186
nvictus
closed
8 months ago
1
Closest improved
#185
agalitsyna
closed
8 months ago
0
Overlap point segment patch #183
#184
smitkadvani
closed
6 months ago
3
overlap between a point and a segment is broken
#183
golobor
closed
6 months ago
0
cols and df_view_col passed to downstream functions
#182
smitkadvani
closed
8 months ago
1
v0.6.0
#181
nvictus
closed
9 months ago
0
Add contributing guide and streamline readme.
#180
nvictus
closed
9 months ago
0
Update guide-quickstart.rst
#179
nvictus
closed
9 months ago
0
Preserve coordinate dtypes
#178
nvictus
closed
9 months ago
3
updates from main
#177
gfudenberg
closed
9 months ago
1
maint: We thank the reviewer...
#176
nvictus
closed
9 months ago
0
make chromarms - broken, or changed?
#175
Phlya
closed
11 months ago
3
Deprecation of `is_categorical_dtype` in pandas 2
#174
benjaminbauer
closed
9 months ago
1
coverage crashes when `cols` is specified
#173
benjaminbauer
closed
9 months ago
2
Update .readthedocs.yaml
#172
Phlya
closed
11 months ago
0
Update overlap docstring - overlap column
#171
sergpolly
closed
10 months ago
1
fix coverage with custom cols1
#170
sergpolly
closed
9 months ago
3
Next