UC2 - Open and Modular Optical Toolbox
New: :mag_right: A youtube seminar that describes UC2: :mag:
New: :mag_right: The MiniBOX insert can be produced with a laser cutter now! Also, we improved the page and added some tips and trick for working with the MiniBOX! Build it, use it, share your thoughts! :mag:
New: We got the official open hardware certification of OSHWA, under [OSHW] DE00110 | Certified open source hardware | oshwa.org/cert!
New: :boom: UC2_v3 is now released! :boom: Watch how much time the IM cubes can save!
We are working on making the IM Cubes and Puzzles available for sale, but we are not able to offer a 'BUY' button yet. If you are interested in buying some components, contact us via email info@useetoo.org
Cite this repository: 
This project provides certified open hardware.
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Making open-science great again!
WARNING THIS SIDE IS UNDER REVISION! MANY CHANGES AHEAD!
UC2 is a general-purpose modular framework for making interactive (electro)-optical projects. Most optical systems such as microscopes follow a simple 4f or Fourier-optical principle, where lenses are aligned such that focal-planes of adjacent components overlap to limit the amount of aberrations as much as possible and to be able to predict the system-behavior easily using Fourier-transforms.
A recent seminar explaining the core concept of UC2 and their recent advances
Following this idea, a microscope as shown in **Fig 1** creates an angular magnification depending on the focal lenghts of the objective fobj and tube lens ftube:
***M4f= ftube/fobj***
Fig. 1: Fourier-Optical Setup; Koehler Illumination where the illumination plane is conjugate to the objective pupil plane (BFP)
Besides optical components, the **UC2** building blocks can also host electronics such as **Arduinos** or **ESP32s** to create ''smart'' functions like LED array illumination, Z-stages, et cetera. Communication can be granted through the wired **USB Serial** BUS or the wireless **REST-API**. For this the dedicated [**UC2-REST**](https://github.com/openUC2/UC2-REST/blob/master/README.md) will help you setting everything up.
**UC2** is in active development. It is meant to be used not only by beginners, but also for professionals dealing with optical setups on a daily basis. Its magnetic click-and-go concept simplifies the process of aligning and adjusting the parts giving new tools acting as rapid-prototyping devices. It also comes with a series of open-source workshops (in the future) explaining the theory behind optics.
People are also encouraged to share their work. We are curious what the community is doing with our little blocks. All necessary details to modify the design of the blocks are given in the sub-folders of the specific folders. Share your ideas through our [@openUC2-Twitter account](https://twitter.com/openuc2).
With the version *UC2_v3* we introduced an **injection moulded (IM) cube**. This makes the assembly easier becuase no screws or magnets are needed for the Base Cube. But there is also a **3D-printed (3DP) cube** that is alternative to the IM one an it is fully compatible - the cubes and baseplates can be arbitrarily combined.
Find out more about the two different Cube designs in [ASSEMBLY_CUBE_Base](./CAD/ASSEMBLY_CUBE_Base) and more about the baseplate puzzles in [ASSEMBLY_Baseplate](./CAD/ASSEMBLY_Baseplate).
*We are working on making the IM Cubes and Puzzles available for sale, but we are not able to offer a 'BUY' button yet. If you are interested in buying some components, contact us via email info@useetoo.org*
A full cube + base-plate looks like that:
Fig. 2: Assembly of the cube + base-plate;
LEFT: IM Cube - Two identical halves of the Cube are pressed together, the Cube connects to the baseplate via lego-like pins;
RIGHT: 3DP Cube - A set of ferro-magnetic screws hold the lid and base-cube in place and connect to four 5mm Neodym ballmagnets sitting in the baseplate, and extra set of M5 screws further fixes the cube to the baseplate and supports the alignment; Optical components find their place inside the cube.
:grey_exclamation: If you are still working with the v2 version of the cube, you find the documentation in the [UC2_v2 branch](https://github.com/bionanoimaging/UC2-GIT/tree/UC2_v2). Check out the Modular Developer Kit to learn about the [UC2 version history](./MDK#uc2-version-history).
**UC2** can be used with cameras from the Raspberry Pi world, but creates even more beautiful images with your cellphone. Thus making cutting edge-research not only affordable, but also available.
A more in-detail project description can be found in the [UC2 White-Paper](./TUTORIALS/DOCUMENTS/UC2_Whitepaper.pdf)
## UC2 as an "open-standard"
The idea is to use **UC2** as an open-standard or bridge to external hardware components and devices such as cameras or lenses. An already existing or customized adapter/insert creates the link to the **UC2** eco-system. A variety of ready-to-use adapters can be found in the folder [CAD](./CAD).
Fig. 3: The structure of any UC2 assembly follows the green lines; A basic cube can hold an insert thus adapting to different components (i.e. lenses, etc.); A number of assembled cube-modules can form a complex optical system here called application
A more in-detail description of the **MDK** (**M**odular **D**eveloper **K**it) which explains how ***your idea*** can be adapted to the module system can be found in the [MDK](./MDK)-folder. There you also found an explanation about the UC2 version history, if you found some confusing information through the repository.
If you have a new part, we are eager to see it. Please feel free to share it on available websites like Twitter, Thingiverse, Github or any other platform of choice!
### Read more about the project in our papers:
The UC2 paper: A versatile and customizable low-cost 3D-printed open standard for microscopic imaging is available on [Nature Communications](https://www.nature.com/articles/s41467-020-19447-9) [](https://doi.org/10.1038/s41467-020-19447-9)
All data from the paper is available in [Zenodo](https://doi.org/10.5281/zenodo.4018965) [](https://doi.org/10.5281/zenodo.4018965)
The Pre-print of the SIM+ISM paper is available on [Biorxiv](https://www.biorxiv.org/content/10.1101/2021.01.08.425840v1) [](https://doi.org/10.1101/2021.01.08.425840)
The COSI conference paper is out on [OSA](https://www.osapublishing.org/abstract.cfm?uri=ISA-2019-ITh3B.5) [](https://doi.org/10.1364/ISA.2019.ITh3B.5)
Where next? [
](./SITEMAP.md)
### Complete overview of setups, modules, parts to buy and parts to print
I'm afraid we outgrew the situation where we could provide a real complete overview. If you're looking for something specific, check the [SITEMAP](./SITEMAP.md) of the core repository and the [overview of the openUC2 repositories](./REPO_OVERVIEW.md).
For the basic modules and setups, find a complete shopping'n'printing list including estimated prices for all modules and setups in this [BILL OF MATERIALS](https://docs.google.com/spreadsheets/d/1U1MndGKRCs0LKE5W8VGreCv9DJbQVQv7O6kgLlB6ZmE/edit?usp=sharing)!
### List of available Setups
Our goal is to make as many setups as possible available, so that people can play with it. Basically everything's possible, you just need to think in blocks! Please have a look in the [APPLICATIONS](./APPLICATIONS/Readme.md) folder for the up to date list of the setups.
Fig. 4: In-line holographic microscope
### Repositories
Currently, **UC2** consists of the following repositories:
* [UC2 Hardware Repo (core)](https://github.com/openUC2/UC2-GIT) (this repository) - [SITEMAP](./SITEMAP.md)
* [UC2-REST Repo](https://github.com/openUC2/UC2-REST) - firmware for microcontrollers
* [UC2 ImSwitch](https://github.com/beniroquai/ImSwitch) - control software for microscopes
* A whole bunch of other repositories! In order to keep the main repository small and maintain a good structure, each sub-project has its own repository - find the [overview here](./REPO_OVERVIEW.md)
### Software
There is a GitHub repository dedicated for the UC2 software. It can be found in the [UC2-REST Repo](https://github.com/openUC2/UC2-REST).
The old and deprecated Raspi version can be found [here](https://github.com/bionanoimaging/UC2-Software-GIT). This supports you with controller APPS for the Raspberry Pi and Android Cellphones.
### Workshops
The documented workshops can be found in the folder [WORKSHOP](./WORKSHOP) and give a step-by-step introduction into the system. We have done multiple workshops together with the HHMI Janelia Farm, UiO Oslo, Lichtwerkstatt Jena and Leibniz IPHT Jena e.V.
If you're interested we are happy to host one near you!
## Get Involved
This project is open so that anyone can get involved. You don't even have to learn CAD designing or programming. Find ways you can contribute in [CONTRIBUTING](CONTRIBUTING.md)
## Kits, License and Collaboration
This project is open-source and is released under the CERN open hardware license. Our aim is to make the kits commercially available.
We encourage everyone who is using our Toolbox to share their results and ideas, so that the Toolbox keeps improving. It should serve as a easy-to-use and easy-to-access general purpose building block solution for the area of STEAM education. All the design files are generally for free, but we would like to hear from you how is it going.
You're free to fork the project and enhance it. If you have any suggestions to improve it or add any additional functions make a pull-request or file an issue.
Please find the type of licenses [here](./License.md)
REMARK: All files have been designed using Autodesk Inventor 2019 (EDUCATION)
## Showcase
This is the mess you can end up during Fourier-optics session using UC2 components. Pure-fun! :-)
## Credits
If you find this project useful, please like this repository, follow us on Twitter and cite the webpage! :-)
From a Beginner to a Professional!
