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opencb
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biodata
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics
Apache License 2.0
29
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34
forks
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TASK-5610 Create the CVDB endpoint analysis/clinical/cvdb/variant/summary and overwrite analysis/clinical/variant
#267
jtarraga
opened
6 days ago
0
TASK-6399 - CI/CD: Include save reports option for tasks workflows
#266
juanfeSanahuja
opened
1 week ago
0
TASK-5964 - Clinical Improvements
#265
pfurio
opened
1 week ago
0
TASK-4970 - New CI/CD should be triggered when a PR is approved for OpenCGA repository
#264
juanfeSanahuja
closed
2 weeks ago
1
TASK-5278 Add haploid calls treatment parameter to family-qc and relatedness
#263
jtarraga
opened
3 weeks ago
0
TASK-5318 - Implement custom annotator to allow clients private files
#262
jtarraga
opened
1 month ago
0
TASK-6122 - Wrong normalization of variants with ins seq
#261
j-coll
closed
2 months ago
0
TASK-5605 - Modification of CI/CD to run opencga and opencga-enterprise unit tests
#260
juanfeSanahuja
closed
2 months ago
0
TASK-5789 - New data model Snp
#259
jtarraga
closed
2 months ago
0
Increase MAX_REGION_COVERAGE
#258
jtarraga
closed
2 months ago
0
Increase MAX_REGION_COVERAGE
#257
jtarraga
closed
3 months ago
0
TASK-5444 - Fix OpenCB repository versions to conform to XetaBase 2.0.0 version
#256
juanfeSanahuja
closed
5 months ago
1
TASK-4158
#255
jtarraga
closed
5 months ago
1
TASK-4437 - Update general dependencies from dependabot (security alerts)
#254
juanfeSanahuja
closed
5 months ago
1
TASK-5425 - PortPatch 1.10.1 -> 2.0.0
#253
juanfeSanahuja
closed
6 months ago
1
TASK-5373 - Error compiling opencga-enterprise - ClinicalAnalyst changes
#252
pfurio
closed
7 months ago
1
TASK-5198 - Catalog changes to improve Clinical reports
#251
pfurio
closed
7 months ago
1
TASK-2095 - Duplicated libraries at opencga/build/libs
#250
juanfeSanahuja
closed
7 months ago
1
spanning deletion normalization error
#249
awab-ahmed
closed
9 months ago
0
TASK-4464
#248
juanfeSanahuja
closed
1 year ago
1
TASK-1111 Add Pharmagenomics data to CellBase
#247
jtarraga
closed
12 months ago
1
TASK-4163
#246
juanfeSanahuja
closed
1 year ago
1
TASK-4150 - Role in cancer info missing from gene-census disease panel
#245
pfurio
opened
1 year ago
1
TASK-2241 Update Exomiser docker image to 13.1.0
#244
jtarraga
closed
1 year ago
1
TASK-3991 - Release CI/CD workflow should put results of test on xetabase dir on report server
#243
juanfeSanahuja
closed
1 year ago
1
TASK-3809 Fix variant annotation for consequence types
#242
jtarraga
closed
1 year ago
1
TASK-3809 Fix variant annotation for consequence types
#241
jtarraga
closed
1 year ago
1
TASK-3953 - CI/CD in task.yml to deploy project dependencies
#240
juanfeSanahuja
closed
1 year ago
1
TASK-2270
#239
juanfeSanahuja
closed
1 year ago
1
TASK-2549 - Role and modeOfInheritance changes in Panel data model
#238
pfurio
closed
1 year ago
1
TASK-2274 HRDetect analysis for mutational signatures
#237
jtarraga
closed
1 year ago
1
TASK-2242 Improve mutational signature analysis
#236
jtarraga
closed
1 year ago
1
TASK-2294 - Include homalt count from aggregated vcf files
#235
j-coll
closed
1 year ago
1
build(deps): bump htsjdk from 2.23.0 to 3.0.1
#234
dependabot[bot]
opened
1 year ago
0
TASK-2342 - Error at variant-index "SQLException: ERROR 201 (22000): Illegal data"
#233
j-coll
closed
1 year ago
1
remove VUS, it's a duplicate of uncertain significance
#232
julie-sullivan
opened
1 year ago
0
TASK-2242
#231
jtarraga
opened
1 year ago
1
TASK-2215 Fix family quality control (relatedness) when saving in OpenCGA catalog
#230
jtarraga
closed
1 year ago
1
REVERT removing bigwig
#229
julie-sullivan
closed
1 year ago
0
TASK-2152
#228
jtarraga
closed
1 year ago
1
build(deps): bump protobuf-java from 3.11.4 to 3.16.3
#227
dependabot[bot]
opened
1 year ago
0
TASK-1573
#226
jtarraga
closed
1 year ago
1
Hotfix 1.5.x - remove bigwig entirely
#225
julie-sullivan
closed
1 year ago
0
TASK-2103
#224
jtarraga
closed
1 year ago
1
TASK-1573 Show FUSION in Role In Cancer column
#223
jtarraga
closed
1 year ago
2
TASK-2094 - ClassNotFoundException: org.apache.commons.collections.CollectionUtils
#222
j-coll
closed
1 year ago
1
TASK-2041
#221
jtarraga
closed
1 year ago
1
TASK-1705
#220
jtarraga
closed
1 year ago
1
TASK-2017
#219
pfurio
closed
1 year ago
1
TASK-1988
#218
j-coll
closed
1 year ago
1
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