issues
search
opencb
/
biodata
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics
Apache License 2.0
29
stars
34
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
REVERT removing bigwig
#229
julie-sullivan
closed
1 year ago
0
TASK-2152
#228
jtarraga
closed
2 years ago
1
build(deps): bump protobuf-java from 3.11.4 to 3.16.3
#227
dependabot[bot]
opened
2 years ago
0
TASK-1573
#226
jtarraga
closed
2 years ago
1
Hotfix 1.5.x - remove bigwig entirely
#225
julie-sullivan
closed
2 years ago
0
TASK-2103
#224
jtarraga
closed
2 years ago
1
TASK-1573 Show FUSION in Role In Cancer column
#223
jtarraga
closed
2 years ago
2
TASK-2094 - ClassNotFoundException: org.apache.commons.collections.CollectionUtils
#222
j-coll
closed
2 years ago
1
TASK-2041
#221
jtarraga
closed
2 years ago
1
TASK-1705
#220
jtarraga
closed
2 years ago
1
TASK-2017
#219
pfurio
closed
2 years ago
1
TASK-1988
#218
j-coll
closed
2 years ago
1
TASK-1935
#217
j-coll
closed
2 years ago
1
include common-lang3 and commons-collections in pox.xml #TASK-1625
#216
phamidko
closed
2 years ago
1
TASK-1194
#215
pfurio
closed
2 years ago
1
TASK-1472
#214
pfurio
closed
2 years ago
1
TASK-1092
#213
j-coll
closed
2 years ago
1
TASK-558
#212
jtarraga
closed
2 years ago
2
TASK-558
#211
jtarraga
closed
2 years ago
2
TASK-888
#210
jtarraga
closed
2 years ago
1
TASK-476
#209
pfurio
closed
2 years ago
1
upgrade log4j
#208
julie-sullivan
closed
2 years ago
1
TASK-552
#207
pfurio
closed
2 years ago
1
TASK-506
#206
imedina
closed
2 years ago
1
TASK-426
#205
imedina
closed
2 years ago
2
Support for clinical variant evidence reviews
#204
jtarraga
closed
2 years ago
0
build(deps): bump protobuf-java from 3.9.2 to 3.16.1
#203
dependabot[bot]
closed
2 years ago
1
Add variant splice data models (e.g., SpliceAI scores)
#202
jtarraga
opened
3 years ago
0
Improve the mutational signature data model
#201
jtarraga
opened
3 years ago
0
Update the data models for alignment quality control metrics
#200
jtarraga
closed
3 years ago
0
Create the Circos plot model
#199
jtarraga
closed
3 years ago
0
merge in MNV fixes from hotfix 1.5.x branch
#198
julie-sullivan
opened
3 years ago
1
Hotfix 1.5.x - fix MNV coordinates
#197
julie-sullivan
closed
3 years ago
0
fix Pair issue (again?)
#196
julie-sullivan
closed
3 years ago
1
Calculate and add VAF during variant normalisation
#195
imedina
opened
3 years ago
0
Do not decompose multiallelic Spanning Deletions when normalizing
#194
j-coll
opened
3 years ago
0
Modify VariantType enum
#193
j-coll
opened
3 years ago
0
build(deps): bump junit from 4.12 to 4.13.1
#192
dependabot[bot]
closed
2 years ago
0
Add VariantNormalizerExtensions
#191
j-coll
opened
4 years ago
0
add gnomad constraints and mirna targets to variant annotation
#190
julie-sullivan
closed
4 years ago
0
Implement new clinical objects
#189
jtarraga
opened
4 years ago
0
fix-mnv-protein-level-clinical-search: bugfix. Attributes now initial…
#188
javild
closed
4 years ago
0
Consolidate quality control stats
#187
imedina
opened
4 years ago
0
Improve gene coverage stats
#186
jtarraga
closed
4 years ago
0
Update clinical data models
#185
jtarraga
closed
4 years ago
0
Data model for the alignment stats
#184
jtarraga
opened
4 years ago
0
Parse external panels to DiseasePanel
#183
pfurio
closed
4 years ago
0
VariantSetStats and SampleVariantStats model changes
#182
j-coll
opened
4 years ago
0
Upgrade htsjdk version to 2.21.3
#181
j-coll
closed
4 years ago
0
avro/Cytoband and core/Cytoband - do we need both?
#180
julie-sullivan
opened
4 years ago
1
Previous
Next