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openproblems-bio
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task_perturbation_prediction
A benchmark on predicting how small molecules change gene expression in different cell types.
https://openproblems.bio/results/perturbation_prediction/
MIT License
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About neurips-2023-data
#80
995884191
closed
1 week ago
3
fix viash 0.9 refactoring
#79
rcannood
closed
2 weeks ago
0
Add cpa
#78
szalata
opened
1 month ago
0
add sc data preprocessing
#77
szalata
closed
2 weeks ago
0
update reference
#76
rcannood
closed
1 month ago
0
add latent additive model
#75
szalata
opened
1 month ago
0
Include CPA evaluation
#74
szalata
opened
2 months ago
0
Add huber loss metric
#73
Paulos2411
closed
4 months ago
0
Add SimpleTransformer model to transformer ensemble
#72
Paulos2411
closed
4 months ago
1
Update to Viash 0.9
#71
rcannood
closed
4 months ago
0
Bump viash-io/viash-actions from 5 to 6
#70
dependabot[bot]
closed
4 months ago
1
fix ci
#69
rcannood
closed
5 months ago
0
Minor refactoring
#68
rcannood
closed
5 months ago
0
add back namespace
#67
rcannood
closed
5 months ago
0
Rename `task-dge-perturbation-prediction` to `task_perturbation_prediction`
#66
rcannood
closed
5 months ago
0
apply suggestions from Elior (See Eliorkalfon/single_cell_pb#11)
#65
rcannood
opened
5 months ago
0
Attempt fixing the transformer_ensemble method
#64
rcannood
closed
5 months ago
0
fix scripts
#63
rcannood
closed
5 months ago
0
reinterpret argument settings
#62
rcannood
closed
5 months ago
0
fix the bootstrapping component to align with what one expects from a bootstrapping method
#61
rcannood
closed
5 months ago
0
store original id
#60
rcannood
closed
5 months ago
0
Clean up metrics
#59
rcannood
closed
5 months ago
2
Implement alternate stability analysis
#58
rcannood
closed
5 months ago
1
Add clipping to layer
#57
rcannood
closed
5 months ago
0
fix id map generator
#56
rcannood
closed
5 months ago
0
Upgrade workflows
#55
rcannood
closed
5 months ago
0
warning on nas in prediction, error in test
#54
rcannood
closed
5 months ago
0
fix fillna
#53
rcannood
closed
5 months ago
0
Update_scripts
#52
rcannood
closed
5 months ago
0
Migrate all data formats from parquet to h5ad and other major improvements
#51
rcannood
closed
5 months ago
0
use non-adjusted p-values
#50
szalata
closed
5 months ago
0
update threshold limits
#49
szalata
closed
5 months ago
0
Add stability analysis
#48
rcannood
closed
5 months ago
0
Multiple fixes
#47
rcannood
closed
6 months ago
0
Clean up transformer ensemble
#46
rcannood
closed
6 months ago
0
add thresholded metrics
#45
szalata
closed
6 months ago
0
Fix prime dimensions
#44
ttunja
closed
6 months ago
0
Bump method requirements
#43
rcannood
closed
6 months ago
0
fix typo in wf
#42
rcannood
closed
6 months ago
0
add train_obs_zip to pyboost in wf
#41
rcannood
closed
6 months ago
0
Fix methods
#40
rcannood
closed
6 months ago
0
move cell type checking to ahead of training with each drug
#39
wangmengbo
closed
6 months ago
0
randomly select cell type if default does not exists
#38
wangmengbo
closed
6 months ago
0
Multiple fixes to components
#37
rcannood
closed
6 months ago
0
use adjusted p-values
#36
szalata
closed
6 months ago
0
update limma design matrix
#35
szalata
closed
6 months ago
0
Fixes to the dataset processing workflows
#34
rcannood
closed
6 months ago
0
fix github action
#33
rcannood
closed
6 months ago
0
Update limma
#32
szalata
closed
6 months ago
0
Adding AmbrosM's solution to methods
#31
andrew-benz
closed
6 months ago
2
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