Create new Reactome evidence tables in rewrite version

[andrewhercules]

On the evidence page in the rewrite, can we please create a new data table that displays the Gene2Phenotype evidence data?

Example GraphQL API query APC and colorectal carcinoma

Data table

Data table column	Disease/phenotype	Pathway	Target modulation	Amino acid variation	Literature
GraphQL API field	evidences.rows[x].disease.name	evidences.rows[x].pathwayName	evidences.rows[x].targetModulation	evidences.rows[x].variations[y].variantAminoacidDescription	evidences.rows[x].literature
Sample data	colorectal adenocarcinoma	APC truncation mutants have impaired AXIN binding	n/a	L-asparagine 1378 replaced with unknown	12 publications

Please note that the GraphQL API is not exposing the evidences.rows[x].targetModulation; however, this field will be available in the next iteration of the API.

Within the data table, can we please do the following?

1. Link the value in the "Disease/phenotype" column to the relevant profile page in the Platform
2. Link the value in the "Pathway" column to Reactome using the following construct - http://www.reactome.org/PathwayBrowser/# + evidences.rows[x].pathwayId (e.g. IRS-mediated signalling)
3. Ensure that the "Amino acid variation" column can accept an empty array as some evidence strings do not have data for this column (e.g. DPM3 and congenital disorder of glycosylation type I - see QC checks section)
4. Use the literature drawer component used in other detail views (e.g. Gene2Phenotype) when the evidence row has 2+ literature references

QC checks

• DPM3 (ENSG00000179085) and congenital disorder of glycosylation type I (EFO_0005545)
• FGF8 (ENSG00000107831) and bone development disease (EFO_0005541)

[andrewhercules]

Can we please make some small adjustments to the data table?

• [x] Remove underscores from value in "Target modulation" column
• [x] Remove bullet points in "Amino acid variation" column if only one value, otherwise show bullet points
• [x] Allow users to search the text in the "Amino acid variation column"
• [x] Include the "Rows per page:" feature

EGFR and cancer

[mirandaio]

@andrewhercules adjustments have been merged. Feel free to check again and close if done.

[andrewhercules]

With the new iteration of the GraphQL API, can we please make some adjustments to the Reactome evidence data table?

• [x] Create a new column called "Reported disease/phenotype" and display the evidences.rows[x].diseaseFromSource value

• [x] After the "Pathway" column, create a new column called "Reaction" and display the evidence.rows[x].reactionId and use that value to link to Reactome using identifiers.org - http://identifiers.org/reactome/ + evidence.rows[x].reactionId (e.g. R-HSA-4791278)

• [x] After the new "Reaction" column, create a new column called "Reported target" and display the evidences.rows[x].targetFromSourceId and use that value to link to UniProt using identifers.org - http://identifiers.org/uniprot/ + evidences.rows[x].targetFromSourceId (e.g. P25054)

• [x] In the "Amino acid variation" column, update the data shown to display the entries in the evidences.rows[x].variantAminoacidDescriptions array

[d0choa]

• [x] Add reported disease/phenotype as tooltip in disease column. The tooltip content would be “Reported disease or phenotype:\n{diseaseFromSource}”