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Create new OTAR CRISPR summary widget and detail view #1721

Closed andrewhercules closed 2 years ago

andrewhercules commented 3 years ago

New prepublication data has been ingested by the ETL pipeline with relevant fields also exposed by the API.

The data has a datatype of ot_partner and the datasource is ot_cripsr.

And so we can now display the data on the evidence page using the following query stucture.

query otarProjectDataEvidence {
  disease(efoId: "EFO_xxxxxxxx") {
    evidences(ensemblIds: ["ENSGxxxxxxxxxxx"], datasourceIds: ["ot_crispr"]) {
      count
      rows {
        disease {
          id
          name
        }
        projectId
        contrast
        studyOverview
        cellType
        cellLineBackground
        crisprScreenLibrary
        statisticalTestTail
        resourceScore
      }
    }
  }
}

Sample queries are available on slide 5 of the design specifications document .

Can we please build an OTAR CRISPR summary widget and detail view for the evidence page, based on the following design specifications?

Summary widget

OTAR Project Data and Evidence Design Specification (6)

Detail view

Prepublication CRISPR knockout screens from Open Targets (OTAR) experimental projects, associating TARGET-SYBMOL and DISESE NAME. Source: Open Targets

Reported disease OTAR project code Study overview Cell type CRISPR screen library Significance
disease.name projectId contrast if not null, otherwise show studyOverview cellType crisprScreenLibrary resourceScore with statisticalTestTail as a FontAwesome icon

OTAR Project Data and Evidence Design Specification (9)

OTAR Project Data and Evidence Design Specification (10)

ktsirigos commented 2 years ago

work done