opentargets / issues

Issue tracker for Open Targets Platform and Open Targets Genetics Portal
https://platform.opentargets.org https://genetics.opentargets.org
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include a new score in the weights table #2111

Closed mkarmona closed 1 year ago

mkarmona commented 3 years ago

The new weight is for the source sQTL

{"type_id": "fpred", "weight": 1.0}
{"type_id": "sqtl", "weight": 1.0}
{"type_id": "eqtl", "weight": 0.66}
{"type_id": "pqtl", "weight": 0.66}
{"type_id": "pchic", "weight": 0.33}
{"type_id": "pqtl", "weight": 0.33}
{"type_id": "fantom5", "weight": 0.33}
{"type_id": "dhscor", "weight": 0.33}
{"type_id": "distance", "weight": 0.33}
ktsirigos commented 2 years ago

duplication of 'pqtl'

ktsirigos commented 2 years ago

@remo87, keep it in mind for whenever you start working on this

d0choa commented 1 year ago

@ireneisdoomed I think you might have covered this space. Make note and close please

mbdebian commented 1 year ago

@remo87 , this issue is pretty old, have you got any more details on this? Maybe @ireneisdoomed ? Thanks!

ireneisdoomed commented 1 year ago

Sorry for missing this. @remo87 @mbdebian, the mentioned update is already in place for production (config) From now on, this configuration falls within the space of the new Genetics ETL. mQTLs have not yet been resolved, but these weights will be part of the configuration of the V2G step. In principle, we'll follow what has been established previously: sQTL: 1.0; pQTL and eQTL: 0.66