opentargets / issues

Issue tracker for Open Targets Platform and Open Targets Genetics Portal
https://platform.opentargets.org https://genetics.opentargets.org
Apache License 2.0
12 stars 2 forks source link

Generalizing quality control flags #3101

Closed DSuveges closed 2 months ago

DSuveges commented 9 months ago

Currently we have a neat infrastructure to flag study loci for whatever reason. However there is a need to apply dataset specific flags to other datasets in a similar manner. Eg. flagging studies that have problematic summary statistics, or lack ancestry annotation to resolve LD.

Tasks

DSuveges commented 7 months ago

QC doesn't make sense for a set of datasets eg. overlaps. So we should move the logic to the relevent datasets instead of inherit to every one. Doing so would also imply having QC field in every schema.