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Ingest pQTL data from UK Biobank #3161

Closed tskir closed 4 months ago

tskir commented 7 months ago

Publication: https://www.nature.com/articles/s41586-023-06592-6

Data: https://www.synapse.org/#!Synapse:syn51364943/files/

tskir commented 7 months ago

@d0choa @DSuveges @ireneisdoomed We discussed this with @addramir yesterday to scope exactly what to ingest and how.

However, the dataset is not fully open access and they operate a queue to download it: image

I have submitted my access request, but they warn it may take up to two weeks to get that processed: image

Until then, working on the implementation of this task is completely blocked.

tskir commented 4 months ago

Data mirrored in the vault; harmonisation to be addressed separately