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Issue tracker for Open Targets Platform and Open Targets Genetics Portal
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Error fetching chembl 33 data #3163

Closed remo87 closed 10 months ago

remo87 commented 10 months ago

Describe the bug While running PIS in the drug step we get the following exception while reading the indexes in Elasticsearch:

URL must include a 'scheme', 'host', and 'port' component (ie 'https://localhost:9200')

Observed behaviour Chembl information is not feteched from the indexes.

Expected behaviour PIS should be able to fetch the chembl information from Elasticsearch

To Reproduce Steps to reproduce the behaviour:

  1. git clone https://github.com/opentargets/platform-input-support
  2. cd platform-input-support
  3. conda env create -f environment.yaml
  4. conda activate otpis
  5. python platform-input-support.py --log-level=DEBUG -steps=drug
  6. See error