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Minor updates for a repeated gentropy ETL run #3256

Closed DSuveges closed 2 weeks ago

DSuveges commented 6 months ago

Upon a thorough QC following the 24.03 genotropy data release some issues were revealed:

  1. A suspiciously low number of variants in the variant index
  2. Strange distribution of PICS credible sets on a probability/cred.set size plot

After identifying the root causes, the following actions were planned:

[1] Renamed datasets: gwas_catalog_curated -> gwas_catalog_PICSed_curated_associations gwas_catalog_summary_stats -> gwas_catalog_PICSed_summary_statistics