There was an issue where a lot of ChEMBL evidence were marked as duplicate.
A solution was implemented similar to what was done for the ClinVar evidence. The granularity was aggregated of the description of phenotypes inside cohortPhenotypes. This has been implemented in the data. See details here: #3328
Tasks
[ ] Add a tooltip to the ChEMBL widget (in both target and disease association pages) in the Disease/phenotype column
Example use case:
platform dev /target/ENSG00000027075/associations. Filter by MONDO_0044964
Use the cohortPhenotypes to add the list of phenotypes.
cohortPhenotypes": [
"Recurrent Mucoepidermoid Carcinoma of the Oral Cavity",
"Stage IV Mucoepidermoid Carcinoma of the Oral Cavity"
]
The tooltip should contain:
All reported phenotypes:
Recurrent Mucoepidermoid Carcinoma of the Oral Cavity
Stage IV Mucoepidermoid Carcinoma of the Oral Cavity
Other information
This has been done previously in the ClinVar widget (see example below)
Note: We do not want to use diseaseFromSource in the ChEMBL widget tooltip which was present in ClinVar widget tooltip.
We only want to use cohortPhenotypes in the ChEMBL widget tooltip.
Background
There was an issue where a lot of ChEMBL evidence were marked as duplicate.
A solution was implemented similar to what was done for the ClinVar evidence. The granularity was aggregated of the description of phenotypes inside
cohortPhenotypes
. This has been implemented in the data. See details here: #3328Tasks
Example use case: platform dev /target/ENSG00000027075/associations. Filter by
MONDO_0044964
Use the
cohortPhenotypes
to add the list of phenotypes.The tooltip should contain:
All reported phenotypes: Recurrent Mucoepidermoid Carcinoma of the Oral Cavity Stage IV Mucoepidermoid Carcinoma of the Oral Cavity
Other information
This has been done previously in the ClinVar widget (see example below)
Note: We do not want to use
diseaseFromSource
in the ChEMBL widget tooltip which was present in ClinVar widget tooltip. We only want to usecohortPhenotypes
in the ChEMBL widget tooltip.